Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QA587_RS11750 Genome accession   NZ_CP121477
Coordinates   2472352..2472747 (+) Length   131 a.a.
NCBI ID   WP_001829977.1    Uniprot ID   A0A4Q9W3V8
Organism   Staphylococcus epidermidis strain 44DSE01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2467352..2477747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA587_RS11725 - 2468771..2469175 (+) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -
  QA587_RS11730 - 2469324..2469557 (+) 234 WP_002456242.1 DUF1146 family protein -
  QA587_RS11735 murA 2469667..2470932 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QA587_RS11740 fabZ 2470966..2471403 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QA587_RS11745 - 2471721..2472161 (-) 441 WP_001829935.1 YwpF-like family protein -
  QA587_RS11750 ssb 2472352..2472747 (+) 396 WP_001829977.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15158.08 Da        Isoelectric Point: 5.2661

>NTDB_id=812401 QA587_RS11750 WP_001829977.1 2472352..2472747(+) (ssb) [Staphylococcus epidermidis strain 44DSE01]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=812401 QA587_RS11750 WP_001829977.1 2472352..2472747(+) (ssb) [Staphylococcus epidermidis strain 44DSE01]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9W3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725