Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RTE57_RS06350 Genome accession   NZ_CP135957
Coordinates   1290930..1291667 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MS1657     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1285930..1296667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTE57_RS06320 (RTE57_06320) yfiL 1286089..1286454 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  RTE57_RS06325 (RTE57_06325) aroF 1286664..1287734 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RTE57_RS06330 (RTE57_06330) tyrA 1287745..1288866 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RTE57_RS06335 (RTE57_06335) pheA 1288909..1290069 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  RTE57_RS06340 (RTE57_06340) pheL 1290168..1290215 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RTE57_RS06345 (RTE57_06345) raiA 1290319..1290660 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RTE57_RS06350 (RTE57_06350) comL 1290930..1291667 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RTE57_RS06355 (RTE57_06355) rluD 1291802..1292782 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RTE57_RS06360 (RTE57_06360) yfiH 1292779..1293510 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  RTE57_RS06365 (RTE57_06365) clpC 1293640..1296213 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=812388 RTE57_RS06350 WP_000197686.1 1290930..1291667(-) (comL) [Escherichia coli strain MS1657]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=812388 RTE57_RS06350 WP_000197686.1 1290930..1291667(-) (comL) [Escherichia coli strain MS1657]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCACCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376