Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Thiosp_RS01000 Genome accession   NZ_CP121473
Coordinates   198034..199470 (+) Length   478 a.a.
NCBI ID   WP_201069213.1    Uniprot ID   -
Organism   Thiorhodovibrio litoralis strain 06511     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 193034..204470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Thiosp_RS00940 (Thiosp_00190) - 193110..193469 (-) 360 WP_201069220.1 helix-turn-helix domain-containing protein -
  Thiosp_RS00945 (Thiosp_00191) - 193466..193753 (-) 288 WP_201069219.1 DUF6516 family protein -
  Thiosp_RS00950 - 194121..194471 (-) 351 WP_201069218.1 hypothetical protein -
  Thiosp_RS24615 - 194380..194697 (-) 318 WP_201069258.1 DUF4143 domain-containing protein -
  Thiosp_RS00955 (Thiosp_00194) - 194751..194999 (+) 249 WP_323696793.1 SEL1-like repeat protein -
  Thiosp_RS00960 - 195021..195149 (-) 129 WP_255324711.1 hypothetical protein -
  Thiosp_RS00965 - 195146..195352 (-) 207 WP_201069216.1 hypothetical protein -
  Thiosp_RS00970 (Thiosp_00195) - 195486..195809 (-) 324 WP_009147845.1 type II toxin-antitoxin system PemK/MazF family toxin -
  Thiosp_RS00975 - 195810..196028 (-) 219 WP_009147844.1 antitoxin MazE family protein -
  Thiosp_RS00980 (Thiosp_00196) - 196271..196531 (+) 261 WP_009147843.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  Thiosp_RS00985 (Thiosp_00197) - 196531..196947 (+) 417 WP_201069215.1 type II toxin-antitoxin system VapC family toxin -
  Thiosp_RS00990 (Thiosp_00198) - 197279..197557 (+) 279 WP_201069257.1 type II toxin-antitoxin system RelE/ParE family toxin -
  Thiosp_RS00995 (Thiosp_00199) - 197569..197877 (+) 309 WP_201069214.1 HigA family addiction module antitoxin -
  Thiosp_RS01000 (Thiosp_00200) pilR 198034..199470 (+) 1437 WP_201069213.1 sigma-54 dependent transcriptional regulator Regulator
  Thiosp_RS01005 (Thiosp_00201) argA 199558..200922 (+) 1365 WP_201069212.1 amino-acid N-acetyltransferase -
  Thiosp_RS01010 (Thiosp_00202) - 200962..201369 (-) 408 WP_201069211.1 hypothetical protein -
  Thiosp_RS01015 (Thiosp_00203) - 201514..203943 (-) 2430 WP_201069209.1 sucrose synthase -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 50520.98 Da        Isoelectric Point: 4.9520

>NTDB_id=812333 Thiosp_RS01000 WP_201069213.1 198034..199470(+) (pilR) [Thiorhodovibrio litoralis strain 06511]
MTSATKSRPRALVVDDEPDILDLVRITLSRMGLEARCVGTLAAAREALTEDSFDFCLTDMRLPDGDGTDLVRHASASFPD
MPVAMVTAYGNMESAVAAMKAGAFDFVSKPLDLRVLRELTDAALRARGGGAADPLDASSPQTALIGESPQIHELRAMIAK
LARNQAPVFISGESGTGKELAASLIHQLGPRADQPFVPVNCGAIPADLVESELFGHRKGSFTGAISDKPGLFQAAHGGTL
FLDEIADLPLPMQVKLLRAIQEKSVRPVGVAKEVPVNVRIISASHLDLADAVARGAFRQDLFYRINVIDLHLPPLRERTG
DIPVLVAHLLPRIAAESGSPAETLADDAMAALCDYAFPGNVRELENILERASALCESSVLSAVDLRLPELQPARVLAETP
APGNRAIASAATAQAPGGMALPGAGRSLAERLDVIEKPLLLEALSQANQDSEAAAAQLGISPRSLKLRLARLNLAIAE

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=812333 Thiosp_RS01000 WP_201069213.1 198034..199470(+) (pilR) [Thiorhodovibrio litoralis strain 06511]
ATGACATCTGCCACCAAATCCAGACCGCGTGCGCTGGTTGTCGATGACGAGCCGGACATTCTTGACTTGGTGCGTATTAC
CCTCTCGCGCATGGGGCTTGAGGCGCGCTGCGTCGGCACCCTGGCGGCCGCGCGCGAGGCGCTGACCGAGGACAGCTTCG
ATTTCTGTCTCACCGACATGCGCCTGCCCGACGGCGATGGAACCGATCTGGTGCGTCACGCCAGTGCCAGCTTTCCGGAC
ATGCCGGTGGCGATGGTCACGGCCTACGGGAATATGGAATCTGCTGTTGCCGCGATGAAAGCCGGCGCCTTCGATTTCGT
CTCCAAACCGCTCGACCTGCGGGTGTTGCGCGAGCTCACCGATGCGGCGCTGCGCGCGCGCGGCGGGGGCGCGGCCGATC
CACTGGACGCGAGCAGCCCGCAGACCGCTTTGATTGGCGAGTCCCCGCAGATTCATGAGCTGCGCGCCATGATCGCCAAG
CTCGCGCGCAATCAGGCGCCGGTTTTCATCAGCGGCGAGAGCGGCACCGGTAAGGAGCTGGCCGCCAGTCTGATTCATCA
ACTCGGGCCTCGCGCAGACCAGCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCGGCTGATCTGGTCGAGAGTGAGCTCT
TCGGTCACCGCAAGGGCAGCTTTACCGGAGCGATCAGCGACAAGCCGGGGCTGTTTCAGGCCGCCCATGGCGGTACCCTG
TTTCTCGATGAGATCGCCGACCTGCCGCTGCCGATGCAGGTCAAACTCCTGCGTGCCATTCAGGAAAAAAGCGTTCGCCC
GGTCGGTGTCGCCAAGGAGGTTCCGGTGAATGTGCGCATCATCAGCGCCAGCCATCTGGATCTGGCCGACGCGGTGGCGC
GGGGCGCTTTTCGTCAAGATCTCTTTTACCGCATCAATGTGATCGACCTGCACCTGCCGCCGCTGCGCGAGCGCACAGGA
GACATTCCGGTTCTGGTCGCGCACCTGCTGCCGCGCATCGCCGCGGAATCCGGCAGCCCGGCGGAAACCCTTGCCGATGA
CGCCATGGCTGCGCTCTGCGACTACGCCTTTCCCGGCAATGTGCGCGAGCTCGAAAATATCCTTGAGCGTGCCAGTGCCT
TGTGCGAATCGAGCGTGCTGAGCGCGGTTGACCTGCGCCTGCCTGAATTGCAGCCGGCGCGCGTCCTGGCCGAAACCCCT
GCGCCTGGAAATCGGGCTATCGCGAGCGCTGCAACTGCACAAGCGCCGGGCGGCATGGCGCTGCCAGGCGCCGGGCGTAG
CCTGGCTGAGCGGCTTGATGTGATTGAAAAACCACTGCTCCTTGAGGCTCTTAGCCAAGCCAATCAGGATTCCGAAGCGG
CGGCCGCCCAACTCGGGATCTCCCCGCGTTCCTTAAAGCTGCGCCTTGCCCGGCTGAATCTTGCCATCGCTGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-118)

Bacterial regulatory protein, Fis family (HTH_8)

(432-471)

Sigma-54 interaction domain (Sigma54_activat)

(144-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

54.158

98.117

0.531
  pilR Acinetobacter baumannii strain A118

48.62

98.536

0.479