Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Thiofri_RS23285 Genome accession   NZ_CP121471
Coordinates   5123045..5124460 (+) Length   471 a.a.
NCBI ID   WP_009148941.1    Uniprot ID   H8Z055
Organism   Thiorhodovibrio frisius strain 970     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5118045..5129460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Thiofri_RS23265 (Thiofri_04774) glnB 5118695..5119033 (-) 339 WP_009148935.1 nitrogen regulatory protein P-II -
  Thiofri_RS23270 (Thiofri_04775) sucD 5119178..5120071 (-) 894 WP_009148937.1 succinate--CoA ligase subunit alpha -
  Thiofri_RS23275 (Thiofri_04776) sucC 5120081..5121262 (-) 1182 WP_009148939.1 ADP-forming succinate--CoA ligase subunit beta -
  Thiofri_RS23280 (Thiofri_04777) - 5121381..5122982 (+) 1602 WP_009148940.1 PAS domain-containing sensor histidine kinase -
  Thiofri_RS23285 (Thiofri_04778) pilR 5123045..5124460 (+) 1416 WP_009148941.1 sigma-54 dependent transcriptional regulator Regulator
  Thiofri_RS23290 (Thiofri_04779) argA 5124500..5125882 (+) 1383 WP_009148943.1 amino-acid N-acetyltransferase -
  Thiofri_RS23295 (Thiofri_04780) - 5125863..5126552 (-) 690 WP_009148944.1 transglycosylase SLT domain-containing protein -
  Thiofri_RS23300 (Thiofri_04781) - 5126552..5126782 (-) 231 WP_009148946.1 DUF350 domain-containing protein -
  Thiofri_RS23305 (Thiofri_04782) - 5126792..5127745 (-) 954 WP_009148947.1 alpha-E domain-containing protein -
  Thiofri_RS23310 (Thiofri_04783) - 5127871..5129388 (-) 1518 WP_009148949.1 circularly permuted type 2 ATP-grasp protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 50013.55 Da        Isoelectric Point: 5.9608

>NTDB_id=812310 Thiofri_RS23285 WP_009148941.1 5123045..5124460(+) (pilR) [Thiorhodovibrio frisius strain 970]
MPKAAAKSKARALVVDDEPDILDLVRITLARMGLEAQCVGTLKAARQALAADRFDFCLTDMRLPDGDGTDLVRHASASCP
EMPVAMVTAYGNMESAVAAMKAGAFDFVSKPLDLRVLRELAAAALRARGRATDSLNTSDGPQTKLIGESPQILELRTLIA
KLARNQAPVFISGESGTGKELAASLIHQLGPRADQPFVPVNCGAIPADLVESELFGHRKGSFTGATSDKPGLFQAAQGGT
LLLDEIADLPLPMQVKLLRAIQEKSVRPVGAAKEVPVDVRIISASHLNLADAVARGAFRQDLFYRINVIDLHLPPLRERT
GDIPMLVAHLLPRIAAESGSPAESLADDAMAALCNYAFPGNVRELENILERASALCESSVLTAADLRLPDLQQTPAAMSS
HPSAAAPLASAPPTAQRPLAERLDAIEKPLLLDALQQSDQNPELAAARLGLSPRSLRLRRARLGLAPDDAT

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=812310 Thiofri_RS23285 WP_009148941.1 5123045..5124460(+) (pilR) [Thiorhodovibrio frisius strain 970]
ATGCCCAAGGCCGCTGCCAAGTCAAAAGCCCGCGCGCTGGTTGTCGATGACGAACCCGATATTCTCGACCTGGTGCGCAT
CACCCTCGCGCGCATGGGGCTCGAGGCCCAGTGCGTTGGCACCCTGAAAGCCGCGCGCCAGGCGCTGGCCGCGGACCGCT
TCGACTTCTGCCTGACCGACATGCGCCTGCCCGATGGCGATGGCACCGATCTGGTACGCCATGCCAGCGCGAGCTGTCCC
GAGATGCCGGTGGCCATGGTCACGGCCTATGGCAACATGGAATCGGCGGTCGCCGCGATGAAAGCCGGCGCTTTTGACTT
CGTCTCCAAACCCCTCGACCTGCGAGTGCTGCGCGAGCTGGCCGCCGCCGCCCTGCGCGCGCGCGGTCGCGCAACCGACA
GCCTAAACACCAGCGACGGCCCTCAGACCAAACTCATTGGCGAATCACCGCAAATTCTTGAGCTGCGCACACTCATCGCC
AAGCTCGCACGCAACCAGGCGCCGGTGTTCATCAGCGGCGAGAGCGGCACCGGCAAAGAGCTGGCTGCCAGCCTGATTCA
TCAGCTCGGCCCGCGCGCCGACCAGCCCTTTGTGCCGGTCAACTGCGGCGCCATTCCGGCCGACCTGGTCGAAAGCGAGC
TCTTCGGCCATCGCAAGGGCAGCTTCACCGGCGCAACCAGCGACAAACCGGGGCTGTTCCAGGCCGCTCAGGGCGGCACC
CTGCTGCTCGATGAAATCGCCGACCTGCCGCTGCCCATGCAGGTGAAACTGCTGCGCGCCATCCAGGAGAAAAGCGTGCG
CCCGGTCGGCGCCGCCAAGGAGGTACCGGTGGATGTGCGCATCATCAGCGCCAGCCATCTGAATCTGGCCGATGCCGTCG
CGCGCGGCGCCTTTCGCCAAGATCTCTTCTACCGCATCAACGTCATCGACCTGCATTTGCCACCCCTGCGCGAACGCACT
GGCGACATCCCGATGCTGGTCGCGCATCTGCTGCCGCGCATTGCCGCAGAATCTGGTAGCCCGGCCGAATCACTTGCCGA
CGACGCCATGGCCGCGCTCTGCAACTACGCCTTTCCCGGCAATGTGCGCGAACTTGAAAACATCCTTGAGCGCGCGAGCG
CCTTGTGCGAATCAAGCGTCTTGACCGCCGCTGATCTGCGCCTGCCCGACCTCCAGCAGACGCCTGCGGCCATGAGCAGC
CATCCCTCCGCCGCCGCGCCACTGGCCAGTGCGCCGCCAACGGCCCAGCGTCCGCTTGCCGAACGCCTCGATGCCATCGA
AAAGCCGCTCCTGCTCGACGCCCTGCAACAAAGTGATCAGAATCCCGAACTTGCCGCCGCGCGACTCGGCCTGTCGCCGC
GCTCCTTGCGATTGCGCCGCGCCCGACTGGGGCTGGCGCCCGACGATGCAACTTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Response regulator receiver domain (Response_reg)

(13-119)

Bacterial regulatory protein, Fis family (HTH_8)

(423-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8Z055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

55.022

97.24

0.535
  pilR Acinetobacter baumannii strain A118

49.036

99.151

0.486