Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   P8634_RS03980 Genome accession   NZ_CP121468
Coordinates   801029..802300 (+) Length   423 a.a.
NCBI ID   WP_086439858.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum strain MSJK0025     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 796029..807300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8634_RS03950 (P8634_03955) rpsB 796188..796967 (+) 780 WP_021815938.1 30S ribosomal protein S2 -
  P8634_RS03955 (P8634_03960) tsf 797058..797936 (+) 879 WP_057195080.1 translation elongation factor Ts -
  P8634_RS03960 (P8634_03965) pyrH 798017..798742 (+) 726 WP_003681954.1 UMP kinase -
  P8634_RS03965 (P8634_03970) frr 798742..799302 (+) 561 WP_021815941.1 ribosome recycling factor -
  P8634_RS03970 (P8634_03975) - 799429..800202 (+) 774 WP_104878017.1 isoprenyl transferase -
  P8634_RS03975 (P8634_03980) - 800219..801007 (+) 789 WP_099032419.1 phosphatidate cytidylyltransferase -
  P8634_RS03980 (P8634_03985) eeP 801029..802300 (+) 1272 WP_086439858.1 RIP metalloprotease RseP Regulator
  P8634_RS03985 (P8634_03990) - 802334..804055 (+) 1722 WP_104878018.1 proline--tRNA ligase -

Sequence


Protein


Download         Length: 423 a.a.        Molecular weight: 46217.61 Da        Isoelectric Point: 6.3997

>NTDB_id=812283 P8634_RS03980 WP_086439858.1 801029..802300(+) (eeP) [Limosilactobacillus fermentum strain MSJK0025]
MIITIITFIIVFGILVLVHEFGHYYFAKRAGILVREFSIGMGPKVWWRRSNGTTYTIRILPLGGYVRLAGADEDEDELRP
GTPVTLQTNEEGKVTLINASEKETLLEGIPLRIVDSDLEDKLIISGYENDDEETVKTYPVDHDATIVERDGTEVRIAPKD
VQFQSASLPARMMTNFAGPMNNFILSLLVFIILGFTLSGIPTNSNVLGGVTKDSVAAKAGLVSGDKITRVATTKVSTWND
ISQAISPNPGKKLAVTYQRDGKTYHTTVTPKTTKQGSQTVGMIGIREEEKFDPVARINYGWRQFITAGTLIFAVLGHMIT
HGFSLNDLGGPVAIYAGTSQATSLGINGILAFLAMLSINLGIVNLIPIPALDGGKLLLNIVEGIIRRPIPEKVEGILNLA
GFALLMILMVLVTYNDIQRYFIH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=812283 P8634_RS03980 WP_086439858.1 801029..802300(+) (eeP) [Limosilactobacillus fermentum strain MSJK0025]
TTGATCATCACCATCATTACTTTTATCATCGTCTTCGGAATCCTGGTGCTCGTTCACGAATTCGGCCACTACTACTTTGC
CAAGCGGGCTGGGATTTTGGTGCGCGAGTTTTCGATCGGGATGGGGCCCAAGGTTTGGTGGCGACGTTCAAACGGGACGA
CCTACACCATCCGGATCCTGCCGCTCGGGGGCTACGTTCGCCTGGCCGGGGCCGATGAAGATGAAGACGAACTCCGTCCC
GGGACGCCGGTGACCTTGCAAACCAATGAGGAAGGCAAGGTGACCCTGATCAACGCCAGCGAAAAGGAAACCCTGTTGGA
GGGGATTCCGTTGCGGATCGTTGACAGCGACCTGGAGGATAAGTTAATCATCTCCGGGTACGAAAATGATGATGAAGAAA
CCGTCAAGACCTACCCGGTTGATCACGACGCGACGATCGTCGAACGGGACGGGACCGAGGTGCGGATCGCCCCCAAGGAC
GTTCAGTTTCAATCGGCCAGCTTACCGGCGCGGATGATGACCAACTTTGCCGGGCCAATGAACAACTTCATCTTGTCCCT
GCTGGTCTTCATCATCCTGGGCTTTACCCTGAGCGGGATCCCCACCAACTCCAACGTCTTGGGCGGGGTAACCAAGGATT
CGGTGGCTGCTAAGGCCGGCCTGGTGAGCGGCGATAAAATTACCAGGGTGGCGACGACCAAGGTCAGCACCTGGAACGAT
ATTTCCCAGGCAATTTCCCCTAACCCGGGGAAGAAGCTCGCCGTTACCTACCAGCGCGATGGCAAGACCTACCACACCAC
CGTGACGCCTAAGACCACCAAACAGGGGAGCCAAACGGTCGGGATGATCGGGATCAGAGAAGAGGAGAAGTTTGATCCGG
TCGCCCGCATTAACTACGGCTGGCGCCAATTTATCACCGCCGGCACCCTGATCTTTGCGGTGCTCGGCCACATGATTACG
CACGGCTTTAGCTTAAACGACCTGGGGGGGCCGGTGGCAATTTACGCCGGCACCTCACAGGCGACCTCGTTAGGGATTAA
CGGCATCCTCGCCTTCTTGGCGATGCTGTCGATTAACCTAGGGATCGTTAACCTGATTCCGATCCCGGCCTTAGACGGGG
GGAAGCTCCTCTTAAACATTGTCGAAGGCATCATTCGCCGGCCAATTCCCGAAAAAGTGGAGGGGATTTTGAATTTGGCT
GGCTTTGCCCTCTTGATGATCCTGATGGTCCTCGTGACCTATAACGACATTCAACGCTACTTTATCCATTAA

Domains


Predicted by InterproScan.

(209-269)

(7-408)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.113

100

0.482

  eeP Streptococcus thermophilus LMD-9

48.113

100

0.482