Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RS157_RS18425 Genome accession   NZ_CP135719
Coordinates   3828298..3828834 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TUM1226     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3823298..3833834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS157_RS18405 (RS157_18405) aphA 3823586..3824299 (+) 714 WP_001226926.1 acid phosphatase AphA -
  RS157_RS18410 (RS157_18410) yjbQ 3824410..3824826 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  RS157_RS18415 (RS157_18415) yjbR 3824830..3825186 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  RS157_RS18420 (RS157_18420) uvrA 3825221..3828043 (-) 2823 WP_315747377.1 excinuclease ABC subunit UvrA Machinery gene
  RS157_RS18425 (RS157_18425) ssb 3828298..3828834 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  RS157_RS18430 (RS157_18430) yjcB 3828933..3829214 (-) 282 WP_001295689.1 YjcB family protein -
  RS157_RS18435 (RS157_18435) pdeC 3829644..3831230 (+) 1587 WP_000019577.1 c-di-GMP phosphodiesterase PdeC -
  RS157_RS18440 (RS157_18440) soxS 3831233..3831556 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  RS157_RS18445 (RS157_18445) soxR 3831642..3832106 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=812264 RS157_RS18425 WP_000168305.1 3828298..3828834(+) (ssb) [Escherichia coli strain TUM1226]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=812264 RS157_RS18425 WP_000168305.1 3828298..3828834(+) (ssb) [Escherichia coli strain TUM1226]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489