Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   P8P68_RS04130 Genome accession   NZ_CP121467
Coordinates   849617..850849 (-) Length   410 a.a.
NCBI ID   WP_002874765.1    Uniprot ID   A0A1X1GRP7
Organism   Streptococcus sp. D7B5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 844617..855849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS04100 (P8P68_04100) - 844807..845775 (+) 969 WP_278276231.1 NAD(P)/FAD-dependent oxidoreductase -
  P8P68_RS04105 (P8P68_04105) whiA 845807..846718 (-) 912 WP_278276232.1 DNA-binding protein WhiA -
  P8P68_RS04110 (P8P68_04110) - 846715..847692 (-) 978 WP_278276233.1 YvcK family protein -
  P8P68_RS04115 (P8P68_04115) rapZ 847689..848579 (-) 891 WP_000163039.1 RNase adapter RapZ -
  P8P68_RS04120 (P8P68_04120) - 848631..849011 (-) 381 WP_001140417.1 RidA family protein -
  P8P68_RS04125 (P8P68_04125) yihA 849021..849608 (-) 588 WP_278276234.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  P8P68_RS04130 (P8P68_04130) clpX 849617..850849 (-) 1233 WP_002874765.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  P8P68_RS04135 (P8P68_04135) - 850881..851051 (-) 171 WP_000442252.1 hypothetical protein -
  P8P68_RS04140 (P8P68_04140) - 851051..851557 (-) 507 WP_278276235.1 dihydrofolate reductase -
  P8P68_RS04145 (P8P68_04145) cmk 851676..852350 (-) 675 WP_000849413.1 (d)CMP kinase -
  P8P68_RS04150 (P8P68_04150) - 852360..852866 (-) 507 WP_000410186.1 SAG1386/EF1546 family surface-associated protein -
  P8P68_RS04155 (P8P68_04155) - 852912..853115 (+) 204 WP_002874767.1 ferredoxin -
  P8P68_RS04160 (P8P68_04160) - 853207..854157 (-) 951 WP_278276236.1 glycosyltransferase family 2 protein -
  P8P68_RS04165 (P8P68_04165) galE 854159..855178 (-) 1020 WP_278276237.1 UDP-glucose 4-epimerase GalE -
  P8P68_RS04170 (P8P68_04170) - 855157..855399 (-) 243 WP_278276238.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45686.26 Da        Isoelectric Point: 4.4581

>NTDB_id=812213 P8P68_RS04130 WP_002874765.1 849617..850849(-) (clpX) [Streptococcus sp. D7B5]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=812213 P8P68_RS04130 WP_002874765.1 849617..850849(-) (clpX) [Streptococcus sp. D7B5]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCTGAGGAAG
TCTTGGCAGACTTGTCTGAAGTACCAAAACCAATCGAACTCCTCAATATCTTAAACCACTATGTGATTGGTCAGGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTATACAATCACTATAAACGCATCAATTTCCATGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAATATCCTGATGATTGGTCCAACTGGTTCAGGGAAAACTTTCTTGGCTCAGACTTTGGCTA
AGAGCTTGAATGTGCCTTTTGCTATTGCAGATGCGACAGCTCTGACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTTTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAACGTGGGATTATCTACGTAGATGAAATTGA
CAAAATTGCCAAGAAGAGCGAGAACGTGTCTATCACACGTGATGTTTCGGGTGAAGGAGTGCAACAAGCCCTTCTTAAAA
TCATCGAAGGAACTGTAGCCAGCGTACCGCCTCAAGGTGGACGCAAACATCCGCAACAAGAGATGATTCAGGTGGATACT
AAAAATATCCTCTTTATCGTGGGTGGTGCTTTTGATGGCATCGAAGAAATCGTTAAACAACGTCTGGGAGAAAAAGTTAT
CGGTTTTGGACAAAACAACAAAGCGATTGACGAAAACAGCTCTTACATGCAAGAAATCATCGCAGAAGACATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGACGCTTACCTGTCTTTGCAGCTCTTGAGCAATTGACGGTCGATGATTTGGTTCGC
ATCTTGAAGGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTACTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGATGAAGCCCTTCAAGAAATCGCCAATAAAGCCATCGAACGCAAGACAGGGGCGCGTGGTCTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAAGTGCCAAGTCAAGAAAATGTGAAATTGGTCCGCATCACGAAAGAAGCTGTCGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GRP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

87.073

100

0.871
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563