Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   P9972_RS17115 Genome accession   NZ_CP121465
Coordinates   3452099..3452788 (-) Length   229 a.a.
NCBI ID   WP_197080391.1    Uniprot ID   -
Organism   Bacillus velezensis strain YA215     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3447099..3457788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9972_RS17080 (P9972_17080) fliW 3447190..3447621 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  P9972_RS17085 (P9972_17085) - 3447651..3448220 (-) 570 WP_024085861.1 DUF6470 family protein -
  P9972_RS17090 (P9972_17090) flgL 3448311..3449228 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  P9972_RS17095 (P9972_17095) flgK 3449240..3450757 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  P9972_RS17100 (P9972_17100) - 3450773..3451255 (-) 483 WP_003151394.1 flagellar protein FlgN -
  P9972_RS17105 (P9972_17105) flgM 3451270..3451536 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  P9972_RS17110 (P9972_17110) - 3451606..3452025 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  P9972_RS17115 (P9972_17115) comFC 3452099..3452788 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  P9972_RS17120 (P9972_17120) - 3452794..3453078 (-) 285 WP_003151389.1 competence protein ComFB -
  P9972_RS17125 (P9972_17125) comFA 3453136..3454521 (-) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  P9972_RS17130 (P9972_17130) - 3454629..3455477 (-) 849 WP_044052857.1 DegV family protein -
  P9972_RS17135 (P9972_17135) degU 3455575..3456264 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  P9972_RS17140 (P9972_17140) degS 3456341..3457504 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25340.04 Da        Isoelectric Point: 8.4899

>NTDB_id=812184 P9972_RS17115 WP_197080391.1 3452099..3452788(-) (comFC) [Bacillus velezensis strain YA215]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEDPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKHSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=812184 P9972_RS17115 WP_197080391.1 3452099..3452788(-) (comFC) [Bacillus velezensis strain YA215]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGACCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGCACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598