Detailed information NTG0812109

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P9875_RS05875
• Genome accession: NZ_CP121464
• Coordinates: 1287467..1288336 (-)
• Length: 289 a.a.
• NCBI ID: WP_278317816.1
• Uniprot ID: -
• Organism: Janthinobacterium rivuli strain DEMB2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1282467..1293336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P9875_RS05840 (P9875_05840)	-	1283684..1284565 (+)	882	WP_278317811.1	ATP-binding protein	-
P9875_RS05845 (P9875_05845)	-	1284562..1284984 (+)	423	WP_278317812.1	NUDIX domain-containing protein	-
P9875_RS05850 (P9875_05850)	-	1285107..1285316 (+)	210	WP_278317813.1	DNA-binding protein	-
P9875_RS05855 (P9875_05855)	-	1285329..1285745 (+)	417	WP_278317814.1	hypothetical protein	-
P9875_RS05860 (P9875_05860)	yacG	1285769..1285960 (-)	192	WP_034748814.1	DNA gyrase inhibitor YacG	-
P9875_RS05865 (P9875_05865)	zapD	1285979..1286734 (-)	756	WP_035824877.1	cell division protein ZapD	-
P9875_RS05870 (P9875_05870)	coaE	1286797..1287444 (-)	648	WP_278317815.1	dephospho-CoA kinase	-
P9875_RS05875 (P9875_05875)	pilD	1287467..1288336 (-)	870	WP_278317816.1	A24 family peptidase	Machinery gene
P9875_RS05880 (P9875_05880)	-	1288443..1289639 (-)	1197	WP_278317817.1	type II secretion system F family protein	-
P9875_RS05885 (P9875_05885)	-	1289713..1291185 (-)	1473	WP_278317818.1	DHA2 family efflux MFS transporter permease subunit	-
P9875_RS05890 (P9875_05890)	-	1291354..1292325 (+)	972	WP_161784208.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31023.87 Da
• Isoelectric Point: 7.7407

>NTDB_id=812109 P9875_RS05875 WP_278317816.1 1287467..1288336(-) (pilD) [Janthinobacterium rivuli strain DEMB2]
MLQDTLLFAAPGNLPVALVAALFGLIVGSFLNVVIHRVPKMMQRESDNYVAEESGLPLPHTDRYNLMLPHSNCTACGHRI
TAMENIPVLSYLLLRGKCSACKSPISVRYPLVEVLTGALSALLIWHFGSGWTGLATLVFAWLLIAMTFIDADTQMLPDDL
TFPLLWAGLLVNINGTFVPLQDAVIGAAAGYLALWAVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSLV
GAVVGIGLIVFAKRGRDKPIPFGPYLAAAGLIALLYRTPLSQLTLGLAG

Nucleotide

• Length: 870 bp

>NTDB_id=812109 P9875_RS05875 WP_278317816.1 1287467..1288336(-) (pilD) [Janthinobacterium rivuli strain DEMB2]
ATGCTGCAAGATACCCTGCTGTTCGCCGCGCCCGGCAATCTGCCCGTCGCCCTCGTCGCCGCCCTGTTCGGCCTGATCGT
CGGCAGTTTCCTGAACGTGGTGATCCACCGCGTGCCGAAAATGATGCAGCGCGAATCCGATAATTACGTGGCGGAAGAAA
GCGGCTTGCCCTTGCCGCACACGGACCGCTACAACCTGATGCTGCCGCACTCGAACTGTACCGCTTGCGGCCACCGCATC
ACGGCCATGGAAAACATTCCCGTCCTCAGTTACCTGCTGCTGCGCGGCAAGTGCAGCGCGTGCAAGTCGCCCATCTCCGT
GCGCTACCCATTAGTGGAAGTGCTGACGGGGGCCCTGTCGGCTCTGTTGATCTGGCACTTCGGCAGCGGCTGGACCGGTC
TCGCCACGCTCGTGTTTGCCTGGCTGCTGATCGCCATGACCTTCATCGATGCCGATACGCAAATGCTGCCCGACGACCTC
ACCTTTCCTCTGCTGTGGGCGGGACTGCTGGTCAATATCAACGGTACTTTCGTGCCGCTGCAAGACGCCGTCATCGGCGC
GGCCGCCGGCTACCTGGCCTTGTGGGCCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG
ACTTCAAATTGCTGGCGGCGCTAGGTGCGTGGCTGGGCTGGACCATGCTGCCGACGATCATCCTGTTGTCGTCGCTGGTG
GGCGCCGTGGTCGGCATCGGCCTGATCGTGTTTGCCAAGCGCGGGCGCGACAAGCCGATTCCGTTCGGCCCCTACCTGGC
CGCCGCGGGTCTCATCGCCCTGCTGTACCGCACGCCCCTGTCACAACTGACGCTGGGCCTGGCCGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.636	95.156	0.529
pilD	Vibrio campbellii strain DS40M4	54.789	90.311	0.495
pilD	Acinetobacter baumannii D1279779	46.713	100	0.467
pilD	Neisseria gonorrhoeae MS11	52.734	88.581	0.467
pilD	Acinetobacter nosocomialis M2	45.675	100	0.457