Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PSm6_RS12145 Genome accession   NZ_AP023081
Coordinates   2680310..2680717 (+) Length   135 a.a.
NCBI ID   WP_021218373.1    Uniprot ID   A0AB36F8H0
Organism   Pseudomonas solani strain Sm006     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2675310..2685717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSm6_RS12115 (PSm6_24370) - 2675479..2676486 (-) 1008 WP_021218367.1 aspartate carbamoyltransferase catalytic subunit -
  PSm6_RS12120 (PSm6_24380) pyrR 2676513..2677025 (-) 513 WP_021218368.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PSm6_RS12125 (PSm6_24390) ruvX 2677038..2677478 (-) 441 WP_031287348.1 Holliday junction resolvase RuvX -
  PSm6_RS12130 (PSm6_24400) - 2677475..2678044 (-) 570 WP_265170289.1 YqgE/AlgH family protein -
  PSm6_RS12135 (PSm6_24410) - 2678087..2678980 (-) 894 WP_043240847.1 energy transducer TonB -
  PSm6_RS12140 (PSm6_24420) gshB 2679068..2680039 (-) 972 WP_021218372.1 glutathione synthase -
  PSm6_RS12145 (PSm6_24430) pilG 2680310..2680717 (+) 408 WP_021218373.1 twitching motility response regulator PilG Regulator
  PSm6_RS12150 (PSm6_24440) pilH 2680766..2681131 (+) 366 WP_003458790.1 twitching motility response regulator PilH -
  PSm6_RS12155 (PSm6_24450) - 2681180..2681716 (+) 537 WP_021218374.1 chemotaxis protein CheW -
  PSm6_RS12160 (PSm6_24460) - 2681910..2683958 (+) 2049 WP_031287349.1 methyl-accepting chemotaxis protein -
  PSm6_RS12165 (PSm6_24470) - 2684021..2684881 (+) 861 WP_265170523.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14842.21 Da        Isoelectric Point: 6.7128

>NTDB_id=81208 PSm6_RS12145 WP_021218373.1 2680310..2680717(+) (pilG) [Pseudomonas solani strain Sm006]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=81208 PSm6_RS12145 WP_021218373.1 2680310..2680717(+) (pilG) [Pseudomonas solani strain Sm006]
ATGGAACAGCATTCCGAGGGTTTGAAGGTCATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCTGAAACTCTGCT
GAAGAAGGTGGGTTGCGAGGTCATTACGGCCGTCGACGGCTTCGACGCATTGGCCAAGATCGCCGATACTCACCCCAATA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCCCTGATCAAAAACAACAGTGCTTTCAAG
TCCACCCCGGTGATCATGCTGTCCTCGAAGGACGGCCTGTTCGATAAGGCCAAGGGTCGCATCGTTGGTTCCGATCAATA
CCTCACCAAGCCTTTCAGCAAGGAAGAGTTGCTCGGCGCGATCAAGACTCACGTGCCTGATTTCACCCCGGTGGAACAAG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment