Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   P9J63_RS16520 Genome accession   NZ_CP121375
Coordinates   3359804..3360805 (-) Length   333 a.a.
NCBI ID   WP_032036669.1    Uniprot ID   A0A062IFE1
Organism   Acinetobacter baumannii strain LRT     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3354804..3365805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J63_RS16490 (P9J63_16490) - 3355863..3356804 (+) 942 WP_085943440.1 triacylglycerol lipase -
  P9J63_RS16495 (P9J63_16495) rplS 3356856..3357224 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  P9J63_RS16500 (P9J63_16500) trmD 3357432..3358172 (-) 741 WP_005109350.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  P9J63_RS16505 (P9J63_16505) rimM 3358218..3358766 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  P9J63_RS16510 (P9J63_16510) rpsP 3358786..3359037 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  P9J63_RS16515 (P9J63_16515) - 3359259..3359807 (-) 549 Protein_3221 PilX N-terminal domain-containing pilus assembly protein -
  P9J63_RS16520 (P9J63_16520) pilW 3359804..3360805 (-) 1002 WP_032036669.1 PilW family protein Machinery gene
  P9J63_RS16525 (P9J63_16525) pilV 3360806..3361366 (-) 561 WP_153564561.1 type IV pilus modification protein PilV Machinery gene
  P9J63_RS16530 (P9J63_16530) fimU 3361360..3361794 (-) 435 WP_032038531.1 GspH/FimT family pseudopilin Machinery gene
  P9J63_RS16535 (P9J63_16535) - 3361781..3362527 (+) 747 WP_002122556.1 IS5-like element ISAba31 family transposase -
  P9J63_RS16540 (P9J63_16540) - 3362565..3362693 (-) 129 Protein_3226 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  P9J63_RS16545 (P9J63_16545) ispH 3362863..3363813 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  P9J63_RS16550 (P9J63_16550) gmk 3363936..3364565 (+) 630 WP_000015937.1 guanylate kinase -
  P9J63_RS16555 (P9J63_16555) rpoZ 3364638..3364916 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  P9J63_RS16560 (P9J63_16560) - 3364955..3365085 (+) 131 Protein_3230 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35820.59 Da        Isoelectric Point: 6.1010

>NTDB_id=812047 P9J63_RS16520 WP_032036669.1 3359804..3360805(-) (pilW) [Acinetobacter baumannii strain LRT]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTMPWGGIVLTGSTVTNANNINFIPKVDTNTYIPEGLLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRVLSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=812047 P9J63_RS16520 WP_032036669.1 3359804..3360805(-) (pilW) [Acinetobacter baumannii strain LRT]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCGCAATTA
ACAGATACAATGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGTAACAAATGCCAATAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGGATTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAGCTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACTCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAGTTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAAGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)

Type IV Pilus-assembly protein W (PilW)

(181-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062IFE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.498

100

0.985