Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   P9J63_RS16525 Genome accession   NZ_CP121375
Coordinates   3360806..3361366 (-) Length   186 a.a.
NCBI ID   WP_153564561.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LRT     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3362033..3362527 3360806..3361366 flank 667


Gene organization within MGE regions


Location: 3360806..3362527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J63_RS16525 (P9J63_16525) pilV 3360806..3361366 (-) 561 WP_153564561.1 type IV pilus modification protein PilV Machinery gene
  P9J63_RS16530 (P9J63_16530) fimU 3361360..3361794 (-) 435 WP_032038531.1 GspH/FimT family pseudopilin Machinery gene
  P9J63_RS16535 (P9J63_16535) - 3361781..3362527 (+) 747 WP_002122556.1 IS5-like element ISAba31 family transposase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20233.18 Da        Isoelectric Point: 8.0111

>NTDB_id=812048 P9J63_RS16525 WP_153564561.1 3360806..3361366(-) (pilV) [Acinetobacter baumannii strain LRT]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSFFNSLCTASQLAQFDAYQAARNANQLSMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGPNT
SVDVSSCMSNDGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=812048 P9J63_RS16525 WP_153564561.1 3360806..3361366(-) (pilV) [Acinetobacter baumannii strain LRT]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATTTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGAGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGACCAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATGACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

97.849

100

0.978
  pilV Acinetobacter baylyi ADP1

40.212

100

0.409