Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   P9J63_RS16530 Genome accession   NZ_CP121375
Coordinates   3361360..3361794 (-) Length   144 a.a.
NCBI ID   WP_032038531.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LRT     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3362033..3362527 3361360..3361794 flank 239


Gene organization within MGE regions


Location: 3361360..3362527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J63_RS16530 (P9J63_16530) fimU 3361360..3361794 (-) 435 WP_032038531.1 GspH/FimT family pseudopilin Machinery gene
  P9J63_RS16535 (P9J63_16535) - 3361781..3362527 (+) 747 WP_002122556.1 IS5-like element ISAba31 family transposase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15653.02 Da        Isoelectric Point: 10.5907

>NTDB_id=812049 P9J63_RS16530 WP_032038531.1 3361360..3361794(-) (fimU) [Acinetobacter baumannii strain LRT]
MVRGIANSKIGFGDLILLLRYFFKLKVSTHPNQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPTSLNWQTASNNTLE
LKNIAADGKQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 435 bp        

>NTDB_id=812049 P9J63_RS16530 WP_032038531.1 3361360..3361794(-) (fimU) [Acinetobacter baumannii strain LRT]
ATGGTACGAGGCATAGCGAATAGTAAAATTGGGTTTGGCGATTTGATTTTACTACTTCGCTATTTTTTTAAGCTAAAAGT
GTCAACACACCCTAATCAAAGAGACTTAATCAACACTTTATCAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATG
TTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACTTCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAG
CTAAAAAATATAGCCGCTGATGGTAAGCAAAGTTCTTTAACGACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGC
AAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTAGAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTG
GCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(34-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.115

78.472

0.778