Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   P9J61_RS16505 Genome accession   NZ_CP121370
Coordinates   3358044..3359045 (-) Length   333 a.a.
NCBI ID   WP_032036669.1    Uniprot ID   A0A062IFE1
Organism   Acinetobacter baumannii strain LRB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3353044..3364045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J61_RS16475 (P9J61_16475) - 3354103..3355044 (+) 942 WP_085943440.1 triacylglycerol lipase -
  P9J61_RS16480 (P9J61_16480) rplS 3355096..3355464 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  P9J61_RS16485 (P9J61_16485) trmD 3355672..3356412 (-) 741 WP_005109350.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  P9J61_RS16490 (P9J61_16490) rimM 3356458..3357006 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  P9J61_RS16495 (P9J61_16495) rpsP 3357026..3357277 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  P9J61_RS16500 (P9J61_16500) - 3357499..3358047 (-) 549 Protein_3218 PilX N-terminal domain-containing pilus assembly protein -
  P9J61_RS16505 (P9J61_16505) pilW 3358044..3359045 (-) 1002 WP_032036669.1 PilW family protein Machinery gene
  P9J61_RS16510 (P9J61_16510) pilV 3359046..3359606 (-) 561 WP_153564561.1 type IV pilus modification protein PilV Machinery gene
  P9J61_RS16515 (P9J61_16515) fimU 3359600..3360034 (-) 435 WP_032038531.1 GspH/FimT family pseudopilin Machinery gene
  P9J61_RS16520 (P9J61_16520) - 3360021..3360767 (+) 747 WP_002122556.1 IS5-like element ISAba31 family transposase -
  P9J61_RS16525 (P9J61_16525) - 3360805..3360933 (-) 129 Protein_3223 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  P9J61_RS16530 (P9J61_16530) ispH 3361103..3362053 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  P9J61_RS16535 (P9J61_16535) gmk 3362176..3362805 (+) 630 WP_000015937.1 guanylate kinase -
  P9J61_RS16540 (P9J61_16540) rpoZ 3362878..3363156 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  P9J61_RS16545 (P9J61_16545) - 3363195..3363325 (+) 131 Protein_3227 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35820.59 Da        Isoelectric Point: 6.1010

>NTDB_id=812006 P9J61_RS16505 WP_032036669.1 3358044..3359045(-) (pilW) [Acinetobacter baumannii strain LRB]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTMPWGGIVLTGSTVTNANNINFIPKVDTNTYIPEGLLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRVLSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=812006 P9J61_RS16505 WP_032036669.1 3358044..3359045(-) (pilW) [Acinetobacter baumannii strain LRB]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCGCAATTA
ACAGATACAATGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGTAACAAATGCCAATAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGGATTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAGCTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACTCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAGTTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAAGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)

Type IV Pilus-assembly protein W (PilW)

(181-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062IFE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.498

100

0.985