Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   P9J61_RS16515 Genome accession   NZ_CP121370
Coordinates   3359600..3360034 (-) Length   144 a.a.
NCBI ID   WP_032038531.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LRB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3360273..3360767 3359600..3360034 flank 239


Gene organization within MGE regions


Location: 3359600..3360767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J61_RS16515 (P9J61_16515) fimU 3359600..3360034 (-) 435 WP_032038531.1 GspH/FimT family pseudopilin Machinery gene
  P9J61_RS16520 (P9J61_16520) - 3360021..3360767 (+) 747 WP_002122556.1 IS5-like element ISAba31 family transposase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15653.02 Da        Isoelectric Point: 10.5907

>NTDB_id=812008 P9J61_RS16515 WP_032038531.1 3359600..3360034(-) (fimU) [Acinetobacter baumannii strain LRB]
MVRGIANSKIGFGDLILLLRYFFKLKVSTHPNQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPTSLNWQTASNNTLE
LKNIAADGKQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 435 bp        

>NTDB_id=812008 P9J61_RS16515 WP_032038531.1 3359600..3360034(-) (fimU) [Acinetobacter baumannii strain LRB]
ATGGTACGAGGCATAGCGAATAGTAAAATTGGGTTTGGCGATTTGATTTTACTACTTCGCTATTTTTTTAAGCTAAAAGT
GTCAACACACCCTAATCAAAGAGACTTAATCAACACTTTATCAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATG
TTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACTTCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAG
CTAAAAAATATAGCCGCTGATGGTAAGCAAAGTTCTTTAACGACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGC
AAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTAGAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTG
GCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(34-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.115

78.472

0.778