Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   P9J61_RS16510 Genome accession   NZ_CP121370
Coordinates   3359046..3359606 (-) Length   186 a.a.
NCBI ID   WP_153564561.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LRB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3360273..3360767 3359046..3359606 flank 667


Gene organization within MGE regions


Location: 3359046..3360767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J61_RS16510 (P9J61_16510) pilV 3359046..3359606 (-) 561 WP_153564561.1 type IV pilus modification protein PilV Machinery gene
  P9J61_RS16515 (P9J61_16515) fimU 3359600..3360034 (-) 435 WP_032038531.1 GspH/FimT family pseudopilin Machinery gene
  P9J61_RS16520 (P9J61_16520) - 3360021..3360767 (+) 747 WP_002122556.1 IS5-like element ISAba31 family transposase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20233.18 Da        Isoelectric Point: 8.0111

>NTDB_id=812007 P9J61_RS16510 WP_153564561.1 3359046..3359606(-) (pilV) [Acinetobacter baumannii strain LRB]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSFFNSLCTASQLAQFDAYQAARNANQLSMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGPNT
SVDVSSCMSNDGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=812007 P9J61_RS16510 WP_153564561.1 3359046..3359606(-) (pilV) [Acinetobacter baumannii strain LRB]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATTTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGAGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGACCAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATGACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

97.849

100

0.978
  pilV Acinetobacter baylyi ADP1

40.212

100

0.409