NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	P9J61_RS01620	Genome accession	NZ_CP121370
Coordinates	325433..326293 (-)	Length	286 a.a.
NCBI ID	WP_032035446.1	Uniprot ID	A0A062IU21
Organism	Acinetobacter baumannii strain LRB
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 320433..331293

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P9J61_RS01595 (P9J61_01595)	-	321324..322634 (+)	1311	WP_032035450.1	tetratricopeptide repeat protein	-
P9J61_RS01600 (P9J61_01600)	-	322711..323037 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
P9J61_RS01605 (P9J61_01605)	rlmB	323139..323888 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
P9J61_RS01610 (P9J61_01610)	-	323924..324838 (+)	915	WP_000075015.1	DMT family transporter	-
P9J61_RS01615 (P9J61_01615)	coaE	324835..325431 (-)	597	WP_032035448.1	dephospho-CoA kinase	-
P9J61_RS01620 (P9J61_01620)	pilD	325433..326293 (-)	861	WP_032035446.1	A24 family peptidase	Machinery gene
P9J61_RS01625 (P9J61_01625)	pilC	326293..327519 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
P9J61_RS01630 (P9J61_01630)	pilB	327549..329261 (-)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
P9J61_RS01635 (P9J61_01635)	tpiA	329552..330346 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
P9J61_RS01640 (P9J61_01640)	secG	330359..330688 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32143.56 Da Isoelectric Point: 7.1041

                                >NTDB_id=811981 P9J61_RS01620 WP_032035446.1 325433..326293(-) (pilD) [Acinetobacter baumannii strain LRB]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGHCQHPINIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=811981 P9J61_RS01620 WP_032035446.1 325433..326293(-) (pilD) [Acinetobacter baumannii strain LRB]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCTCTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA

ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAA

TATTCGCTACCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A062IU21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437

Detailed information NTG0811981