Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RS160_RS06470 Genome accession   NZ_CP135706
Coordinates   1278104..1278841 (-) Length   245 a.a.
NCBI ID   WP_241231011.1    Uniprot ID   -
Organism   Escherichia coli strain TUM1880     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1273104..1283841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS160_RS27410 - 1274290..1274382 (-) 93 Protein_1260 hypothetical protein -
  RS160_RS06435 (RS160_06435) - 1274343..1275134 (+) 792 WP_409998371.1 contractile injection system protein, VgrG/Pvc8 family -
  RS160_RS06440 (RS160_06440) - 1275177..1275437 (+) 261 WP_000488108.1 ogr/Delta-like zinc finger family protein -
  RS160_RS06445 (RS160_06445) - 1275628..1275765 (+) 138 Protein_1263 Hok/Gef family protein -
  RS160_RS06450 (RS160_06450) - 1275904..1276200 (+) 297 WP_001519189.1 TM2 domain-containing protein -
  RS160_RS06455 (RS160_06455) - 1276393..1276590 (+) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  RS160_RS06460 (RS160_06460) - 1276535..1277341 (+) 807 WP_000215756.1 DNA-methyltransferase -
  RS160_RS06465 (RS160_06465) raiA 1277492..1277833 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RS160_RS06470 (RS160_06470) comL 1278104..1278841 (-) 738 WP_241231011.1 outer membrane protein assembly factor BamD Machinery gene
  RS160_RS06475 (RS160_06475) rluD 1278976..1279956 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RS160_RS06480 (RS160_06480) yfiH 1279953..1280684 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  RS160_RS06485 (RS160_06485) clpC 1280814..1283387 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.42 Da        Isoelectric Point: 6.4874

>NTDB_id=811964 RS160_RS06470 WP_241231011.1 1278104..1278841(-) (comL) [Escherichia coli strain TUM1880]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVINRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=811964 RS160_RS06470 WP_241231011.1 1278104..1278841(-) (comL) [Escherichia coli strain TUM1880]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCATTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376