Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   P3S51_RS11660 Genome accession   NZ_CP121303
Coordinates   2336504..2336995 (-) Length   163 a.a.
NCBI ID   WP_311917902.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2331504..2341995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S51_RS11640 (P3S51_11640) - 2333452..2334201 (-) 750 WP_311917898.1 PilX N-terminal domain-containing pilus assembly protein -
  P3S51_RS11645 (P3S51_11645) - 2334203..2335186 (-) 984 WP_311917899.1 PilW family protein -
  P3S51_RS11650 (P3S51_11650) pilV 2335187..2335690 (-) 504 WP_311917900.1 type IV pilus modification protein PilV -
  P3S51_RS11655 (P3S51_11655) - 2335693..2336172 (-) 480 WP_311917901.1 Tfp pilus assembly protein FimT/FimU -
  P3S51_RS11660 (P3S51_11660) comE 2336504..2336995 (-) 492 WP_311917902.1 type IV pilin protein Machinery gene
  P3S51_RS11665 (P3S51_11665) - 2337008..2340745 (-) 3738 WP_311917903.1 PilC/PilY family type IV pilus protein -
  P3S51_RS11670 (P3S51_11670) - 2340770..2341513 (-) 744 WP_311917904.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18232.93 Da        Isoelectric Point: 9.2339

>NTDB_id=811755 P3S51_RS11660 WP_311917902.1 2336504..2336995(-) (comE) [Acinetobacter sp. ANC 7201]
MNIKNGFTLIELMVILAVIAIIAAIAVPSYQSEIRKLDASAVQQEMLKLADQLERYKSRNFSYHGFDPKYLYDEVNPMSS
VNFPFKGTKKYTINLYDSSEATGKKLLSSDSGLGQRWAIIALSESEKNYSFLFTSTGLRCKNKTKANINFTGCGAVNTGM
ETW

Nucleotide


Download         Length: 492 bp        

>NTDB_id=811755 P3S51_RS11660 WP_311917902.1 2336504..2336995(-) (comE) [Acinetobacter sp. ANC 7201]
ATGAATATAAAAAATGGTTTTACCTTAATAGAATTAATGGTGATTTTAGCTGTTATTGCGATAATAGCGGCTATTGCAGT
ACCGTCTTATCAATCTGAAATTAGAAAGCTAGATGCGTCTGCTGTGCAACAAGAAATGCTTAAATTGGCAGATCAATTAG
AGCGATATAAGAGTCGAAATTTTTCATACCATGGTTTTGATCCAAAGTATTTATACGATGAAGTAAATCCGATGAGCTCT
GTTAATTTTCCATTTAAAGGTACAAAAAAATACACGATTAATTTGTATGATAGTAGTGAAGCAACAGGAAAAAAACTATT
AAGTTCAGATAGTGGTTTAGGGCAAAGATGGGCAATTATTGCTTTAAGTGAAAGTGAAAAAAATTATAGTTTTTTATTCA
CAAGTACAGGGCTTCGTTGTAAAAACAAAACCAAAGCAAACATTAATTTTACAGGTTGTGGTGCTGTAAATACAGGTATG
GAAACTTGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

49.412

100

0.515
  pilY2 Acinetobacter baumannii D1279779

36.31

100

0.374