Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   P3S51_RS11385 Genome accession   NZ_CP121303
Coordinates   2282919..2283548 (+) Length   209 a.a.
NCBI ID   WP_154771844.1    Uniprot ID   A0A6L6GBW1
Organism   Acinetobacter sp. ANC 7201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2277919..2288548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3S51_RS11375 (P3S51_11375) - 2280080..2280847 (-) 768 WP_311917878.1 NAD(P)H-binding protein -
  P3S51_RS11380 (P3S51_11380) recG 2280881..2282926 (+) 2046 WP_154771845.1 ATP-dependent DNA helicase RecG -
  P3S51_RS11385 (P3S51_11385) comF 2282919..2283548 (+) 630 WP_154771844.1 ComF family protein Machinery gene
  P3S51_RS11390 (P3S51_11390) - 2283620..2284024 (-) 405 WP_154771843.1 NUDIX domain-containing protein -
  P3S51_RS11395 (P3S51_11395) - 2284021..2284620 (-) 600 WP_154771842.1 TIGR00730 family Rossman fold protein -
  P3S51_RS11400 (P3S51_11400) - 2284773..2285786 (+) 1014 WP_154771841.1 CorA family divalent cation transporter -
  P3S51_RS11405 (P3S51_11405) - 2285899..2286189 (-) 291 WP_171501178.1 STAS domain-containing protein -
  P3S51_RS11410 (P3S51_11410) - 2286203..2286832 (-) 630 WP_154771840.1 phospholipid-binding protein MlaC -
  P3S51_RS11415 (P3S51_11415) - 2286853..2287533 (-) 681 WP_311917879.1 outer membrane lipid asymmetry maintenance protein MlaD -
  P3S51_RS11420 (P3S51_11420) mlaE 2287533..2288312 (-) 780 WP_311917880.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24109.92 Da        Isoelectric Point: 7.8762

>NTDB_id=811754 P3S51_RS11385 WP_154771844.1 2282919..2283548(+) (comF) [Acinetobacter sp. ANC 7201]
MFNLIKSATSQLSTLDTCQLCGVDAQAMHSICQDCWNNLPWYKQNIQRQEIDISVACYYAYPIDRIIQKFKYEQQLHYQT
LLAGVLKEVRIPKVQAIVPMPISNERLVERGFNQALVLAQILTKDLNIPVWQPISRSNQYSQKGLNRLERLENIDTQFEI
NELSKIKYRRVLILDDVVTTGSSIHALKLKLEELGCQKIYATCLAYADN

Nucleotide


Download         Length: 630 bp        

>NTDB_id=811754 P3S51_RS11385 WP_154771844.1 2282919..2283548(+) (comF) [Acinetobacter sp. ANC 7201]
ATGTTTAATTTAATAAAAAGTGCTACTTCACAATTAAGCACATTGGACACTTGCCAACTTTGCGGTGTAGATGCCCAAGC
AATGCATTCTATTTGCCAAGACTGCTGGAATAATTTACCTTGGTATAAACAAAATATACAACGCCAAGAAATAGATATTT
CTGTCGCTTGTTACTATGCCTATCCTATAGATCGAATTATTCAAAAGTTTAAATATGAACAACAGCTTCATTATCAAACG
TTATTGGCTGGCGTTTTAAAAGAAGTTCGTATTCCTAAAGTACAAGCCATTGTGCCTATGCCAATTTCAAATGAACGCCT
AGTAGAGCGTGGTTTCAACCAAGCCTTGGTATTGGCACAAATATTAACGAAAGATTTAAACATTCCTGTTTGGCAACCTA
TATCACGCTCAAATCAATATTCACAAAAAGGCTTAAACCGCTTAGAACGCCTTGAAAATATTGATACCCAATTTGAAATC
AATGAACTATCAAAAATCAAATATCGTCGTGTACTTATTTTGGATGATGTTGTGACAACAGGAAGTTCAATTCACGCATT
GAAACTTAAATTAGAAGAGTTAGGTTGCCAAAAAATCTATGCAACTTGTCTCGCCTACGCAGACAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L6GBW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.538

93.301

0.574
  comF Acinetobacter baumannii D1279779

61.026

93.301

0.569