Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCUAC_RS01985 Genome accession   NZ_AP023077
Coordinates   420143..420778 (-) Length   211 a.a.
NCBI ID   WP_072688917.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415143..425778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS01950 mlaE 415478..416254 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  OCUAC_RS01955 - 416254..416934 (+) 681 WP_072688918.1 outer membrane lipid asymmetry maintenance protein MlaD -
  OCUAC_RS01960 - 416961..417602 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  OCUAC_RS01965 - 417614..417901 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  OCUAC_RS01970 - 417972..418985 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  OCUAC_RS01975 - 419143..419724 (+) 582 WP_031966425.1 TIGR00730 family Rossman fold protein -
  OCUAC_RS01980 - 419739..420140 (+) 402 WP_000849704.1 NUDIX domain-containing protein -
  OCUAC_RS01985 comF 420143..420778 (-) 636 WP_072688917.1 ComF family protein Machinery gene
  OCUAC_RS01990 recG 420771..422816 (-) 2046 WP_072688915.1 ATP-dependent DNA helicase RecG -
  OCUAC_RS01995 - 422837..423652 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  OCUAC_RS02000 adeT2 423732..424718 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24579.76 Da        Isoelectric Point: 9.8358

>NTDB_id=81163 OCUAC_RS01985 WP_072688917.1 420143..420778(-) (comF) [Acinetobacter baumannii strain OCU_Ac16a]
MFKFLKPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=81163 OCUAC_RS01985 WP_072688917.1 420143..420778(-) (comF) [Acinetobacter baumannii strain OCU_Ac16a]
ATGTTTAAGTTTTTAAAGCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAACCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGTTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986

Multiple sequence alignment