Detailed information NTG0081162

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: OCUAC_RS01640
• Genome accession: NZ_AP023077
• Coordinates: 348940..349362 (+)
• Length: 140 a.a.
• NCBI ID: WP_024433097.1
• Uniprot ID: A0AAP1W5M5
• Organism: Acinetobacter baumannii strain OCU_Ac16a
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 343940..354362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCUAC_RS01630	-	344267..348367 (+)	4101	WP_072618019.1	PilC/PilY family type IV pilus protein	-
OCUAC_RS01635	-	348377..348940 (+)	564	WP_031961383.1	type IV pilin protein	-
OCUAC_RS01640	comF	348940..349362 (+)	423	WP_024433097.1	type IV pilin protein	Machinery gene
OCUAC_RS01645	rpsP	349510..349761 (+)	252	WP_000260334.1	30S ribosomal protein S16	-
OCUAC_RS01650	rimM	349781..350329 (+)	549	WP_000189236.1	ribosome maturation factor RimM	-
OCUAC_RS01655	trmD	350375..351115 (+)	741	WP_000464598.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OCUAC_RS01660	rplS	351323..351691 (+)	369	WP_000014562.1	50S ribosomal protein L19	-
OCUAC_RS01665	-	351744..352685 (-)	942	WP_085916958.1	triacylglycerol lipase	-
OCUAC_RS01670	-	352800..353831 (-)	1032	WP_025466223.1	lipase secretion chaperone	-

Sequence

Protein

• Length: 140 a.a.
• Molecular weight: 15517.59 Da
• Isoelectric Point: 9.2459

>NTDB_id=81162 OCUAC_RS01640 WP_024433097.1 348940..349362(+) (comF) [Acinetobacter baumannii strain OCU_Ac16a]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRADVQSEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPKTNTIQAGNGTVLLNSDGQKCWTKGQSCTTSTTSNWDGK

Nucleotide

• Length: 423 bp

>NTDB_id=81162 OCUAC_RS01640 WP_024433097.1 348940..349362(+) (comF) [Acinetobacter baumannii strain OCU_Ac16a]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAATATAAAATTCGGACGAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTAAAACAAATACGATTCA
AGCTGGAAATGGGACTGTACTTTTGAATAGTGACGGGCAGAAATGTTGGACTAAAGGTCAGTCTTGTACAACTTCAACCA
CTTCCAATTGGGATGGCAAGTAA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (28-107)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	54.167	100	0.557
pilE	Acinetobacter baumannii D1279779	52.941	97.143	0.514
pilA2	Legionella pneumophila str. Paris	39.416	97.857	0.386
pilA2	Legionella pneumophila strain ERS1305867	39.416	97.857	0.386