Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P8632_RS04095 Genome accession   NZ_CP121263
Coordinates   815879..816274 (+) Length   131 a.a.
NCBI ID   WP_049437359.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FSEL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 810879..821274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8632_RS04065 (P8632_04055) atpD 810984..812396 (+) 1413 WP_002448706.1 F0F1 ATP synthase subunit beta -
  P8632_RS04070 (P8632_04060) - 812418..812819 (+) 402 WP_002448708.1 F0F1 ATP synthase subunit epsilon -
  P8632_RS04075 (P8632_04065) - 813128..813358 (+) 231 WP_002448711.1 DUF1146 family protein -
  P8632_RS04080 (P8632_04070) murA 813465..814730 (+) 1266 WP_049437361.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P8632_RS04085 (P8632_04075) fabZ 814758..815195 (+) 438 WP_002448673.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P8632_RS04090 (P8632_04080) - 815245..815685 (-) 441 WP_002448687.1 YwpF-like family protein -
  P8632_RS04095 (P8632_04085) ssb 815879..816274 (+) 396 WP_049437359.1 single-stranded DNA-binding protein Machinery gene
  P8632_RS04100 (P8632_04090) - 816669..817460 (+) 792 WP_064207236.1 transglycosylase family protein -
  P8632_RS04105 (P8632_04095) tenA 817852..818540 (+) 689 Protein_805 thiaminase II -
  P8632_RS04110 (P8632_04100) thiD 818533..819354 (+) 822 WP_064207237.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P8632_RS04115 (P8632_04105) thiM 819347..820135 (+) 789 WP_002448660.1 hydroxyethylthiazole kinase -
  P8632_RS04120 (P8632_04110) thiE 820138..820776 (+) 639 WP_002448695.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15113.28 Da        Isoelectric Point: 6.9535

>NTDB_id=811450 P8632_RS04095 WP_049437359.1 815879..816274(+) (ssb) [Staphylococcus hominis strain FSEL1]
MLNKIVIVGRMTKDAKIYNNEEVKIATFSVATERNYKDENDEIACDYILCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDSSLNTDTYPFDNLELMNIK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=811450 P8632_RS04095 WP_049437359.1 815879..816274(+) (ssb) [Staphylococcus hominis strain FSEL1]
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATAATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATAGCGTGTGACTATATATTGTGTAAAGCATTTG
GTAAGATGGCCAGTAACATTGAAAAATATACTTCTCAAGGATCATTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTAACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAGCTCACTAAATACAGACACTTATCCATTTGATAATCTCGAATTAATGAATATAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.809

100

0.748
  ssb Staphylococcus aureus MW2

74.046

100

0.74