Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P7F77_RS11450 Genome accession   NZ_CP121204
Coordinates   2267142..2267537 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA0907     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2262142..2272537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F77_RS11425 (P7F77_11430) thiE 2262740..2263381 (-) 642 WP_223671414.1 thiamine phosphate synthase -
  P7F77_RS11430 (P7F77_11435) thiM 2263383..2264174 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  P7F77_RS11435 (P7F77_11440) thiD 2264158..2264988 (-) 831 WP_000594949.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P7F77_RS11440 (P7F77_11445) tenA 2264981..2265670 (-) 690 WP_000396067.1 thiaminase II -
  P7F77_RS11445 (P7F77_11450) sceD 2266058..2266753 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  P7F77_RS11450 (P7F77_11455) ssb 2267142..2267537 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  P7F77_RS11455 (P7F77_11460) - 2267731..2268171 (+) 441 WP_000846751.1 YwpF-like family protein -
  P7F77_RS11460 (P7F77_11465) fabZ 2268227..2268667 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P7F77_RS11465 (P7F77_11470) murA 2268701..2269966 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P7F77_RS11470 (P7F77_11475) - 2270077..2270310 (-) 234 WP_000384523.1 DUF1146 family protein -
  P7F77_RS11475 (P7F77_11480) - 2270442..2270535 (-) 94 Protein_2222 hypothetical protein -
  P7F77_RS11480 (P7F77_11485) - 2270908..2271312 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=811062 P7F77_RS11450 WP_000932694.1 2267142..2267537(-) (ssb) [Staphylococcus aureus strain SA0907]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=811062 P7F77_RS11450 WP_000932694.1 2267142..2267537(-) (ssb) [Staphylococcus aureus strain SA0907]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATACTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992