Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P7F70_RS08455 Genome accession   NZ_CP121201
Coordinates   1684549..1685037 (-) Length   162 a.a.
NCBI ID   WP_104968488.1    Uniprot ID   A0A2L0D669
Organism   Streptococcus pluranimalium strain SP28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1679549..1690037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS08435 (P7F70_08440) - 1680594..1681265 (+) 672 WP_278024021.1 DUF1129 family protein -
  P7F70_RS08440 (P7F70_08445) - 1681411..1682703 (-) 1293 WP_278024022.1 citrate:proton symporter -
  P7F70_RS08445 (P7F70_08450) - 1682713..1683714 (-) 1002 WP_104968487.1 isocitrate/isopropylmalate dehydrogenase family protein -
  P7F70_RS08450 (P7F70_08455) rpsR 1684272..1684511 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  P7F70_RS08455 (P7F70_08460) ssb 1684549..1685037 (-) 489 WP_104968488.1 single-stranded DNA-binding protein Machinery gene
  P7F70_RS08460 (P7F70_08465) rpsF 1685049..1685339 (-) 291 WP_104968489.1 30S ribosomal protein S6 -
  P7F70_RS08470 (P7F70_08475) - 1686806..1687213 (+) 408 WP_218653645.1 hypothetical protein -
  P7F70_RS08475 (P7F70_08480) mutY 1687269..1688417 (+) 1149 WP_218653646.1 A/G-specific adenine glycosylase -
  P7F70_RS08480 (P7F70_08485) - 1688449..1689090 (-) 642 WP_218653647.1 HAD family phosphatase -
  P7F70_RS08485 (P7F70_08490) - 1689252..1689378 (-) 127 Protein_1611 aldo/keto reductase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17971.63 Da        Isoelectric Point: 4.7187

>NTDB_id=811017 P7F70_RS08455 WP_104968488.1 1684549..1685037(-) (ssb) [Streptococcus pluranimalium strain SP28]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSQSSYNGGGYNNQSSNDAFSSSSQTPNFGRDESPFGNSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=811017 P7F70_RS08455 WP_104968488.1 1684549..1685037(-) (ssb) [Streptococcus pluranimalium strain SP28]
ATGATTAATAATGTAGTACTTGTTGGTCGTATGACCAGAGATGCAGAACTTCGTTACACACCGAGCAATGTAGCAGTAGC
TACTTTCTCTCTTGCAGTTAACCGTAACTTCAAGAGTCAAAACGGTGAACGTGAAGCTGATTTCATTAATTGTGTGATTT
GGCGCCAGCCAGCCGAGAATTTAGCTAACTGGGCTAAAAAAGGTGCCTTAATCGGTATCACTGGACGTATTCAGACACGT
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTAACAGAAGTTGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCACAAAGTTCATACAATGGTGGTGGCTATAATAACCAATCATCAAACGATGCTTTCTCATCTT
CATCACAAACACCAAACTTTGGTCGAGACGAGAGCCCGTTTGGTAATTCAAACCCAATGGATATCTCAGATGACGATCTA
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D669

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.591

100

0.599