Detailed information NTG0810894

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: RS173_RS18040
• Genome accession: NZ_CP135643
• Coordinates: 3734538..3735812 (-)
• Length: 424 a.a.
• NCBI ID: WP_016238286.1
• Uniprot ID: -
• Organism: Escherichia coli strain TUM17543
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3729538..3740812

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS173_RS18030 (RS173_18030)	hupB	3731515..3731787 (-)	273	WP_001043542.1	nucleoid-associated protein HU-beta	-
RS173_RS18035 (RS173_18035)	lon	3731996..3734350 (-)	2355	WP_001468089.1	endopeptidase La	-
RS173_RS18040 (RS173_18040)	clpX	3734538..3735812 (-)	1275	WP_016238286.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
RS173_RS18045 (RS173_18045)	clpP	3735938..3736561 (-)	624	WP_000122253.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
RS173_RS18050 (RS173_18050)	tig	3736807..3738105 (-)	1299	WP_001198389.1	trigger factor	-
RS173_RS18055 (RS173_18055)	bolA	3738449..3738766 (-)	318	WP_000973448.1	transcriptional regulator BolA	-
RS173_RS18060 (RS173_18060)	yajG	3739071..3739649 (+)	579	WP_001295326.1	lipoprotein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 46402.10 Da
• Isoelectric Point: 4.9982

>NTDB_id=810894 RS173_RS18040 WP_016238286.1 3734538..3735812(-) (clpX) [Escherichia coli strain TUM17543]
MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIG
QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDT
SKILFICGGAFAGLDKVISHRVETCSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEE
ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE
SVIDGQSKPLLIYGKPEAQQASGE

Nucleotide

• Length: 1275 bp

>NTDB_id=810894 RS173_RS18040 WP_016238286.1 3734538..3735812(-) (clpX) [Escherichia coli strain TUM17543]
ATGACAGATAAACGCAAAGATGGCTCAGGCAAATTGCTGTATTGCTCTTTTTGCGGCAAAAGCCAGCATGAAGTGCGCAA
GCTGATTGCCGGTCCATCCGTGTATATCTGCGACGAATGTGTTGATTTATGTAACGACATCATTCGCGAAGAGATTAAAG
AAGTTGCACCGCATCGTGAACGCAGTGCGCTACCGACGCCGCATGAAATTCGCAACCACCTGGACGATTACGTTATCGGT
CAGGAACAGGCGAAAAAAGTGCTGGCGGTCGCGGTATACAACCACTACAAACGTCTGCGCAACGGAGATACCAGCAATGG
CGTCGAGTTGGGCAAAAGTAACATTCTGCTGATCGGTCCGACCGGTTCCGGTAAAACGCTGCTGGCCGAAACGCTGGCGC
GCCTGCTGGACGTTCCGTTCACCATGGCTGACGCAACCACGCTGACCGAAGCCGGTTATGTGGGCGAAGACGTTGAAAAC
ATCATTCAGAAGCTGTTGCAGAAGTGCGATTACGACGTACAGAAAGCGCAGCGCGGGATTGTCTACATCGATGAAATTGA
CAAGATTTCTCGTAAGTCAGACAACCCGTCCATTACCCGAGACGTTTCCGGTGAAGGCGTACAGCAGGCACTGTTGAAAC
TGATCGAAGGTACGGTAGCTGCTGTTCCGCCGCAAGGTGGGCGTAAACATCCGCAACAGGAATTCTTGCAGGTTGATACC
TCTAAGATCCTGTTTATCTGTGGCGGTGCGTTTGCCGGTCTGGATAAAGTGATTTCCCATCGTGTAGAAACCTGTTCCGG
CATTGGTTTTGGCGCGACGGTAAAAGCGAAGTCCGACAAAGCAAGCGAAGGCGAGCTGCTGGCGCAGGTTGAACCGGAAG
ATCTGATCAAGTTTGGTCTGATCCCTGAGTTCATTGGTCGTCTGCCGGTTGTCGCAACGTTGAATGAACTGAGCGAAGAA
GCTCTGATTCAGATCCTCAAAGAGCCGAAAAACGCCCTGACCAAGCAGTATCAGGCGCTGTTTAATCTGGAAGGCGTGGA
TCTGGAATTCCGTGACGAGGCGTTGGATGCTATCGCTAAGAAAGCGATGGCGCGTAAAACCGGTGCCCGTGGCCTGCGTT
CTATCGTAGAAGCCGCACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGATGTCGAAAAAGTGGTTATCGACGAG
TCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGTAAGCCGGAAGCGCAACAGGCATCTGGTGAATAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

• AAA domain (Cdc48 subfamily) (AAA_2) (112-310)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.85	94.575	0.566
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.122	96.698	0.533