Detailed information NTG0810894

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: P8934_RS08540
• Genome accession: NZ_CP121193
• Coordinates: 1780848..1781699 (-)
• Length: 283 a.a.
• NCBI ID: WP_278033801.1
• Uniprot ID: -
• Organism: Halomonas sp. CKK8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1775848..1786699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P8934_RS08510 (P8934_08510)	rpsA	1776087..1777763 (+)	1677	WP_278033796.1	30S ribosomal protein S1	-
P8934_RS08515 (P8934_08515)	-	1778070..1778456 (+)	387	WP_133634931.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-
P8934_RS08520 (P8934_08520)	-	1778702..1778989 (+)	288	WP_278033797.1	hypothetical protein	-
P8934_RS08525 (P8934_08525)	-	1779042..1779917 (-)	876	WP_278033798.1	DNA replication terminus site-binding protein	-
P8934_RS08530 (P8934_08530)	yacG	1779914..1780147 (-)	234	WP_278033799.1	DNA gyrase inhibitor YacG	-
P8934_RS08535 (P8934_08535)	coaE	1780190..1780804 (-)	615	WP_278033800.1	dephospho-CoA kinase	-
P8934_RS08540 (P8934_08540)	pilD	1780848..1781699 (-)	852	WP_278033801.1	A24 family peptidase	Machinery gene
P8934_RS08545 (P8934_08545)	nagZ	1781848..1782861 (+)	1014	WP_278033802.1	beta-N-acetylhexosaminidase	-
P8934_RS08550 (P8934_08550)	-	1782905..1783483 (+)	579	WP_278033803.1	hypoxanthine-guanine phosphoribosyltransferase	-
P8934_RS08555 (P8934_08555)	-	1783694..1785385 (-)	1692	WP_278033804.1	AMP-binding protein	-
P8934_RS08560 (P8934_08560)	-	1785471..1785914 (-)	444	WP_278033805.1	MerR family DNA-binding transcriptional regulator	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 30808.28 Da
• Isoelectric Point: 7.6159

>NTDB_id=810894 P8934_RS08540 WP_278033801.1 1780848..1781699(-) (pilD) [Halomonas sp. CKK8]
MLADLPPFLLWPLAVVLGLCLGSFLNVVITRLPVMLMRGWRAEAREALEMAPEEAPPFNLVTPRSLCPRCEAPIAWHDNI
PLLGWFKRRGHCASCHTRISPQYPLVELAGGVLAVAVLALFGPTLEALFILGACLALLAMAVIDLRTQLLPDLLTLPLLW
AGLLYQLHFQPLLLPSAVIGAMAGYLVLWSFYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPLVLILSAGAGAVVGI
LIQLAIPRLRGAPLPFGPWLVMAGWIALLAGEPLMALYTGLLY

Nucleotide

• Length: 852 bp

>NTDB_id=810894 P8934_RS08540 WP_278033801.1 1780848..1781699(-) (pilD) [Halomonas sp. CKK8]
TTGCTCGCCGACCTCCCCCCCTTCCTGCTCTGGCCCCTGGCGGTCGTCCTGGGCCTGTGCCTGGGCAGCTTCCTCAACGT
GGTGATCACCCGGCTGCCGGTAATGCTGATGCGCGGCTGGCGCGCCGAGGCCCGAGAGGCCCTTGAAATGGCGCCGGAAG
AGGCACCGCCCTTCAACCTGGTGACCCCCCGCTCGCTGTGCCCGCGCTGCGAGGCCCCCATCGCCTGGCACGACAACATC
CCGCTGCTCGGCTGGTTCAAGCGCCGCGGGCACTGTGCCAGCTGCCACACGCGCATCAGCCCCCAGTACCCCCTGGTGGA
GCTCGCCGGGGGCGTGCTGGCCGTGGCGGTGCTGGCGCTCTTCGGGCCGACCCTGGAGGCGCTGTTCATCCTCGGCGCCT
GCCTGGCCCTGCTGGCCATGGCGGTGATCGACCTGCGCACCCAGCTGCTCCCGGACCTGCTCACCCTGCCCCTGCTGTGG
GCAGGGCTGCTCTACCAGCTGCACTTTCAGCCGTTGCTGCTGCCCTCGGCCGTCATCGGTGCCATGGCCGGGTACCTCGT
GCTGTGGAGCTTCTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGCTACGGCGACTTCAAGCTGCTGGCCG
CCCTGGGCGCCTGGCTGGGCTGGCAATACCTGCCGCTGGTGCTGATCCTCTCCGCCGGGGCGGGAGCGGTGGTGGGCATC
CTCATCCAGCTGGCCATCCCGCGTCTGCGCGGTGCCCCGCTGCCCTTCGGGCCCTGGCTGGTGATGGCCGGCTGGATCGC
CCTGCTGGCCGGAGAGCCGCTGATGGCGCTCTATACCGGGCTGCTGTATTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-240)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.439	98.233	0.505
pilD	Vibrio campbellii strain DS40M4	46.57	97.88	0.456
pilD	Neisseria gonorrhoeae MS11	46.545	97.173	0.452
pilD	Acinetobacter nosocomialis M2	45.221	96.113	0.435
pilD	Acinetobacter baumannii D1279779	45.018	95.76	0.431