Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P8F79_RS14060 Genome accession   NZ_CP121172
Coordinates   2818607..2819134 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain PC04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2813607..2824134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8F79_RS14025 (P8F79_14020) - 2814258..2815148 (-) 891 WP_048542918.1 PhzF family phenazine biosynthesis isomerase -
  P8F79_RS14030 (P8F79_14025) - 2815188..2815592 (-) 405 WP_053076886.1 nucleoside 2-deoxyribosyltransferase -
  P8F79_RS14035 (P8F79_14030) - 2815595..2816440 (-) 846 WP_048542916.1 DUF2785 domain-containing protein -
  P8F79_RS14040 (P8F79_14035) - 2816481..2817029 (-) 549 WP_048542914.1 nucleotidyltransferase family protein -
  P8F79_RS14045 (P8F79_14040) - 2817230..2817541 (+) 312 Protein_2727 Abi family protein -
  P8F79_RS14050 (P8F79_14045) - 2817560..2817724 (+) 165 WP_158259168.1 hypothetical protein -
  P8F79_RS14055 (P8F79_14050) rpsR 2818305..2818547 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  P8F79_RS14060 (P8F79_14055) ssbA 2818607..2819134 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  P8F79_RS14065 (P8F79_14060) rpsF 2819162..2819455 (-) 294 WP_025906202.1 30S ribosomal protein S6 -
  P8F79_RS14070 (P8F79_14065) ychF 2819627..2820727 (-) 1101 WP_048542912.1 redox-regulated ATPase YchF -
  P8F79_RS14075 (P8F79_14070) - 2820731..2820928 (-) 198 WP_025906204.1 DUF951 domain-containing protein -
  P8F79_RS14080 (P8F79_14075) - 2820952..2821836 (-) 885 WP_049320694.1 mechanosensitive ion channel family protein -
  P8F79_RS14085 (P8F79_14080) - 2821848..2822684 (-) 837 WP_048542910.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=810856 P8F79_RS14060 WP_025906200.1 2818607..2819134(-) (ssbA) [Mammaliicoccus sciuri strain PC04]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=810856 P8F79_RS14060 WP_025906200.1 2818607..2819134(-) (ssbA) [Mammaliicoccus sciuri strain PC04]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGTCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537