Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   P8F82_RS09200 Genome accession   NZ_CP121162
Coordinates   1967619..1968182 (-) Length   187 a.a.
NCBI ID   WP_017722273.1    Uniprot ID   A0A2T4PJ80
Organism   Staphylococcus xylosus strain PC20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1962619..1973182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8F82_RS09175 (P8F82_09175) - 1963201..1963413 (+) 213 WP_029379120.1 NINE protein -
  P8F82_RS09180 (P8F82_09180) - 1964014..1964505 (-) 492 WP_119610852.1 hypothetical protein -
  P8F82_RS09185 (P8F82_09185) - 1965754..1966950 (+) 1197 WP_147630424.1 dipeptidase -
  P8F82_RS09200 (P8F82_09200) comK/comK1 1967619..1968182 (-) 564 WP_017722273.1 competence protein ComK Regulator
  P8F82_RS09205 (P8F82_09205) - 1968435..1968653 (+) 219 WP_029379123.1 IDEAL domain-containing protein -
  P8F82_RS09210 (P8F82_09210) - 1968753..1969739 (-) 987 WP_042362968.1 lipoate--protein ligase -
  P8F82_RS09215 (P8F82_09215) - 1969939..1970124 (+) 186 WP_002483735.1 DUF2187 family protein -
  P8F82_RS09220 (P8F82_09220) - 1970130..1970732 (+) 603 WP_029379125.1 CPBP family glutamic-type intramembrane protease -
  P8F82_RS09225 (P8F82_09225) - 1971023..1972780 (+) 1758 WP_347287850.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21879.23 Da        Isoelectric Point: 9.5361

>NTDB_id=810751 P8F82_RS09200 WP_017722273.1 1967619..1968182(-) (comK/comK1) [Staphylococcus xylosus strain PC20]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=810751 P8F82_RS09200 WP_017722273.1 1967619..1968182(-) (comK/comK1) [Staphylococcus xylosus strain PC20]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTACAACCATGCAATTTAGCTACTGGGCAATATGAAGGTAG
TTACTTGCTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGAGTATCTAAAATCATCGACCGTTCATGTAGGTTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGATACCATGCGTATTACAGGTATAAGCAGTAAGCCACCCATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGATAATACCTGGATTAATATTCATTATGTACA
TAATATTAGGCCACTTAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAACATTTCTGCTC
ATAGTATGCATCATCAATATTTAAATGGTATATACTATTATTACATGATGGATAGGGCAGCAAGAGTCGCTACATTTGAT
CCTGATTCGCCGATTGATTATACTAAACCACAATTAAATATATATGAAGCATTAGCTAAATATTCGTTGTTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4PJ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.738

97.861

0.545
  comK/comK1 Staphylococcus aureus N315

55.738

97.861

0.545