Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P8F82_RS04250 Genome accession   NZ_CP121162
Coordinates   950009..950428 (+) Length   139 a.a.
NCBI ID   WP_119610665.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain PC20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 945009..955428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8F82_RS04220 (P8F82_04220) atpD 945049..946461 (+) 1413 WP_042362320.1 F0F1 ATP synthase subunit beta -
  P8F82_RS04225 (P8F82_04225) - 946481..946885 (+) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  P8F82_RS04230 (P8F82_04230) - 947227..947460 (+) 234 WP_042362321.1 DUF1146 family protein -
  P8F82_RS04235 (P8F82_04235) murA 947567..948832 (+) 1266 WP_042362322.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P8F82_RS04240 (P8F82_04240) fabZ 948890..949327 (+) 438 WP_029377977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P8F82_RS04245 (P8F82_04245) - 949378..949818 (-) 441 WP_017722099.1 YwpF-like family protein -
  P8F82_RS04250 (P8F82_04250) ssb 950009..950428 (+) 420 WP_119610665.1 single-stranded DNA-binding protein Machinery gene
  P8F82_RS04255 (P8F82_04255) - 950855..951550 (+) 696 WP_042362324.1 transglycosylase family protein -
  P8F82_RS04260 (P8F82_04260) tenA 951990..952670 (+) 681 WP_119610506.1 thiaminase II -
  P8F82_RS04265 (P8F82_04265) thiD 952672..953493 (+) 822 WP_107545722.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  P8F82_RS04270 (P8F82_04270) thiM 953486..954274 (+) 789 WP_058626046.1 hydroxyethylthiazole kinase -
  P8F82_RS04275 (P8F82_04275) thiE 954277..954915 (+) 639 WP_058626045.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16181.59 Da        Isoelectric Point: 5.9435

>NTDB_id=810733 P8F82_RS04250 WP_119610665.1 950009..950428(+) (ssb) [Staphylococcus xylosus strain PC20]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRNKDEVNEFQEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=810733 P8F82_RS04250 WP_119610665.1 950009..950428(+) (ssb) [Staphylococcus xylosus strain PC20]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACAAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGCATCACTGGACAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAACAAAGA
TGAAGTTAACGAATTTCAAGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

65.421

76.978

0.504
  ssb Staphylococcus aureus MW2

64.486

76.978

0.496