Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | P8F80_RS00045 | Genome accession | NZ_CP121161 |
| Coordinates | 10300..10854 (+) | Length | 184 a.a. |
| NCBI ID | WP_112193831.1 | Uniprot ID | A0A2Z4VY05 |
| Organism | Ligilactobacillus murinus strain PC39 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1522..45875 | 10300..10854 | within | 0 |
Gene organization within MGE regions
Location: 1522..45875
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8F80_RS00010 (P8F80_00010) | dnaN | 1522..2661 (+) | 1140 | WP_004049713.1 | DNA polymerase III subunit beta | - |
| P8F80_RS00015 (P8F80_00015) | yaaA | 2910..3134 (+) | 225 | WP_004049711.1 | S4 domain-containing protein YaaA | - |
| P8F80_RS00020 (P8F80_00020) | recF | 3143..4360 (+) | 1218 | WP_135942272.1 | DNA replication/repair protein RecF | - |
| P8F80_RS00025 (P8F80_00025) | gyrB | 4381..6339 (+) | 1959 | WP_004049707.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| P8F80_RS00030 (P8F80_00030) | gyrA | 6437..8899 (+) | 2463 | WP_004049705.1 | DNA gyrase subunit A | - |
| P8F80_RS00035 (P8F80_00035) | - | 8996..9631 (-) | 636 | WP_326516389.1 | NAD(P)-dependent oxidoreductase | - |
| P8F80_RS00040 (P8F80_00040) | rpsF | 9973..10263 (+) | 291 | WP_004049701.1 | 30S ribosomal protein S6 | - |
| P8F80_RS00045 (P8F80_00045) | ssb | 10300..10854 (+) | 555 | WP_112193831.1 | single-stranded DNA-binding protein | Machinery gene |
| P8F80_RS00050 (P8F80_00050) | rpsR | 10876..11112 (+) | 237 | WP_003695889.1 | 30S ribosomal protein S18 | - |
| P8F80_RS00055 (P8F80_00055) | - | 11182..11709 (+) | 528 | WP_004047940.1 | helix-turn-helix domain-containing protein | - |
| P8F80_RS00060 (P8F80_00060) | - | 11694..12569 (+) | 876 | WP_326516802.1 | IS3 family transposase | - |
| P8F80_RS00065 (P8F80_00065) | - | 13067..14029 (-) | 963 | WP_326516031.1 | IS30 family transposase | - |
| P8F80_RS00070 (P8F80_00070) | - | 14242..14772 (-) | 531 | WP_326516390.1 | hypothetical protein | - |
| P8F80_RS00075 (P8F80_00075) | - | 14933..15139 (+) | 207 | WP_004049696.1 | hypothetical protein | - |
| P8F80_RS00080 (P8F80_00080) | - | 15153..16841 (-) | 1689 | WP_326516391.1 | IS1182 family transposase | - |
| P8F80_RS00085 (P8F80_00085) | - | 17030..18013 (-) | 984 | WP_004049689.1 | DUF1002 domain-containing protein | - |
| P8F80_RS00090 (P8F80_00090) | tnpA | 18139..18594 (-) | 456 | WP_004050858.1 | IS200/IS605 family transposase | - |
| P8F80_RS00095 (P8F80_00095) | - | 18668..19918 (+) | 1251 | WP_004050805.1 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| P8F80_RS00100 (P8F80_00100) | pnuC | 20299..21069 (+) | 771 | WP_326516392.1 | nicotinamide riboside transporter PnuC | - |
| P8F80_RS00105 (P8F80_00105) | - | 21311..23326 (+) | 2016 | WP_326516393.1 | DHH family phosphoesterase | - |
| P8F80_RS00110 (P8F80_00110) | rplI | 23354..23803 (+) | 450 | WP_004049682.1 | 50S ribosomal protein L9 | - |
| P8F80_RS00115 (P8F80_00115) | - | 23913..24626 (+) | 714 | WP_276507777.1 | helix-turn-helix domain-containing protein | - |
| P8F80_RS00120 (P8F80_00120) | - | 24563..25474 (+) | 912 | WP_112193163.1 | IS3 family transposase | - |
| P8F80_RS00125 (P8F80_00125) | - | 25585..26100 (-) | 516 | WP_326516394.1 | YbhB/YbcL family Raf kinase inhibitor-like protein | - |
| P8F80_RS00130 (P8F80_00130) | - | 26090..27193 (-) | 1104 | WP_326516395.1 | hypothetical protein | - |
| P8F80_RS00135 (P8F80_00135) | - | 27183..27830 (-) | 648 | WP_326516396.1 | L-threonylcarbamoyladenylate synthase | - |
| P8F80_RS00140 (P8F80_00140) | - | 27818..28957 (-) | 1140 | WP_326516397.1 | LeuA family protein | - |
| P8F80_RS00145 (P8F80_00145) | - | 29083..29970 (+) | 888 | WP_076149716.1 | LysR family transcriptional regulator | - |
| P8F80_RS00150 (P8F80_00150) | - | 30221..31105 (-) | 885 | WP_326516398.1 | LysR family transcriptional regulator | - |
| P8F80_RS00155 (P8F80_00155) | - | 31228..32148 (+) | 921 | WP_326516399.1 | DMT family transporter | - |
| P8F80_RS00160 (P8F80_00160) | - | 32206..32970 (-) | 765 | WP_135056039.1 | LytR/AlgR family response regulator transcription factor | - |
| P8F80_RS00165 (P8F80_00165) | - | 32964..34292 (-) | 1329 | WP_326516400.1 | GHKL domain-containing protein | - |
| P8F80_RS00170 (P8F80_00170) | - | 34844..36016 (+) | 1173 | WP_004047661.1 | IS256 family transposase | - |
| P8F80_RS00175 (P8F80_00175) | - | 36066..36326 (-) | 261 | WP_326516401.1 | hypothetical protein | - |
| P8F80_RS00180 (P8F80_00180) | - | 36364..37191 (-) | 828 | WP_326516402.1 | ABC transporter ATP-binding protein | - |
| P8F80_RS12370 | - | 37363..37575 (-) | 213 | WP_148458451.1 | LPXTG cell wall anchor domain-containing protein | - |
| P8F80_RS12375 | - | 37496..37696 (+) | 201 | Protein_37 | IS30 family transposase | - |
| P8F80_RS00185 (P8F80_00185) | - | 38073..38285 (-) | 213 | WP_004049671.1 | hypothetical protein | - |
| P8F80_RS12380 | - | 38328..38399 (-) | 72 | Protein_39 | ATP-binding cassette domain-containing protein | - |
| P8F80_RS00190 (P8F80_00190) | - | 38527..38949 (+) | 423 | WP_326516403.1 | hypothetical protein | - |
| P8F80_RS12385 | - | 39187..39411 (+) | 225 | WP_148458531.1 | 4'-phosphopantetheinyl transferase family protein | - |
| P8F80_RS00195 (P8F80_00195) | - | 39535..40161 (-) | 627 | WP_148458519.1 | LexA family protein | - |
| P8F80_RS00200 (P8F80_00200) | - | 40308..40514 (+) | 207 | WP_135942522.1 | hypothetical protein | - |
| P8F80_RS00205 (P8F80_00205) | - | 40511..40765 (+) | 255 | WP_257588984.1 | hypothetical protein | - |
| P8F80_RS00210 (P8F80_00210) | - | 40836..42941 (+) | 2106 | WP_326516404.1 | glycoside hydrolase domain-containing protein | - |
| P8F80_RS00215 (P8F80_00215) | - | 43039..43656 (-) | 618 | WP_257577289.1 | hypothetical protein | - |
| P8F80_RS00220 (P8F80_00220) | - | 43689..44312 (-) | 624 | WP_135997901.1 | hypothetical protein | - |
| P8F80_RS00225 (P8F80_00225) | dnaB | 44487..45875 (+) | 1389 | WP_004049661.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20064.77 Da Isoelectric Point: 4.6382
>NTDB_id=810703 P8F80_RS00045 WP_112193831.1 10300..10854(+) (ssb) [Ligilactobacillus murinus strain PC39]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGSSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGSGFDTTSN
NSNNAADPFAGGQQIDISDDDLPF
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGSSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGSGFDTTSN
NSNNAADPFAGGQQIDISDDDLPF
Nucleotide
Download Length: 555 bp
>NTDB_id=810703 P8F80_RS00045 WP_112193831.1 10300..10854(+) (ssb) [Ligilactobacillus murinus strain PC39]
TTGATCAATTCAGTTGTTCTAGTAGGTCGCTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGTGTAATGT
GGCGTAAAGCAGCCGAAAACTTTGCTAATTTTACCCACAAAGGTTCCTTAGTAGGGATCGAAGGCCGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAGCAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACAAATGATGCTTTTGGTGGTAGTGGTTTTGATACCACTTCAAAC
AATAGTAACAATGCGGCTGATCCATTTGCCGGTGGGCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA
TTGATCAATTCAGTTGTTCTAGTAGGTCGCTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGTGTAATGT
GGCGTAAAGCAGCCGAAAACTTTGCTAATTTTACCCACAAAGGTTCCTTAGTAGGGATCGAAGGCCGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAGCAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACAAATGATGCTTTTGGTGGTAGTGGTTTTGATACCACTTCAAAC
AATAGTAACAATGCGGCTGATCCATTTGCCGGTGGGCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.081 |
100 |
0.614 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.15 |
100 |
0.571 |