Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   P8R98_RS08590 Genome accession   NZ_CP121159
Coordinates   1742565..1743374 (-) Length   269 a.a.
NCBI ID   WP_001289498.1    Uniprot ID   X5KFV3
Organism   Streptococcus agalactiae strain S1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1737565..1748374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS08575 smc 1737785..1741324 (-) 3540 WP_047212078.1 chromosome segregation protein SMC -
  P8R98_RS08580 rnc 1741332..1742018 (-) 687 WP_000661525.1 ribonuclease III -
  P8R98_RS08585 - 1742194..1742562 (-) 369 WP_000719385.1 YbaN family protein -
  P8R98_RS08590 vicX 1742565..1743374 (-) 810 WP_001289498.1 MBL fold metallo-hydrolase Regulator
  P8R98_RS08595 vicK 1743378..1744727 (-) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  P8R98_RS08600 vicR 1744720..1745430 (-) 711 WP_000722052.1 response regulator YycF Regulator
  P8R98_RS08605 - 1745770..1746525 (+) 756 WP_161501822.1 amino acid ABC transporter ATP-binding protein -
  P8R98_RS08610 - 1746537..1747337 (+) 801 WP_000946171.1 transporter substrate-binding domain-containing protein -
  P8R98_RS08615 - 1747350..1748045 (+) 696 WP_000173639.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30273.24 Da        Isoelectric Point: 6.2265

>NTDB_id=810624 P8R98_RS08590 WP_001289498.1 1742565..1743374(-) (vicX) [Streptococcus agalactiae strain S1]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=810624 P8R98_RS08590 WP_001289498.1 1742565..1743374(-) (vicX) [Streptococcus agalactiae strain S1]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCACGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGTAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGGGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5KFV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766