Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   P8R98_RS05395 Genome accession   NZ_CP121159
Coordinates   1064131..1065357 (+) Length   408 a.a.
NCBI ID   WP_278043529.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1059131..1070357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS05365 - 1059349..1059797 (-) 449 Protein_1015 DUF1836 domain-containing protein -
  P8R98_RS05370 - 1059889..1061172 (-) 1284 WP_161501896.1 hydroxymethylglutaryl-CoA reductase, degradative -
  P8R98_RS05375 - 1061174..1062346 (-) 1173 WP_001873152.1 hydroxymethylglutaryl-CoA synthase -
  P8R98_RS05380 - 1062500..1063339 (+) 840 WP_000158595.1 thymidylate synthase -
  P8R98_RS05385 - 1063419..1063913 (+) 495 WP_000166043.1 dihydrofolate reductase -
  P8R98_RS05390 - 1063931..1064101 (+) 171 WP_001189822.1 hypothetical protein -
  P8R98_RS05395 clpX 1064131..1065357 (+) 1227 WP_278043529.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  P8R98_RS05400 yihA 1065368..1065964 (+) 597 WP_000796925.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  P8R98_RS05405 - 1066026..1066574 (-) 549 WP_000573135.1 TetR/AcrR family transcriptional regulator -
  P8R98_RS05410 - 1066666..1067058 (+) 393 Protein_1024 HXXEE domain-containing protein -
  P8R98_RS05415 - 1067329..1067979 (+) 651 WP_025193621.1 HXXEE domain-containing protein -
  P8R98_RS05420 - 1068109..1069485 (+) 1377 WP_000427482.1 amino acid permease -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44866.28 Da        Isoelectric Point: 4.4424

>NTDB_id=810613 P8R98_RS05395 WP_278043529.1 1064131..1065357(+) (clpX) [Streptococcus agalactiae strain S1]
MAGNRNNDMNVYCSFCGKSQDEVKKIIAGNGVFICNECVTLSQEIIKEELAEEVLADLAEVPKPKELLEILNQYVVGQDR
AKRALAVAVYNHYKRVSYTESSDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQINTKN
ILFIVGGAFDGIEDLVKQRLGEKVIGFGQTSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALELLTAEDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALLAIADKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEGT
DKPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=810613 P8R98_RS05395 WP_278043529.1 1064131..1065357(+) (clpX) [Streptococcus agalactiae strain S1]
ATGGCTGGGAATCGTAATAACGATATGAATGTCTATTGTTCATTTTGTGGCAAAAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAATGGTGTTTTCATTTGTAATGAATGTGTGACCTTATCACAAGAAATTATTAAGGAAGAATTAGCTGAGGAAG
TACTGGCTGATTTAGCAGAAGTACCAAAACCTAAGGAACTATTAGAAATATTAAATCAATATGTTGTAGGGCAAGATCGT
GCTAAACGTGCTTTAGCAGTTGCTGTCTACAATCATTACAAGCGTGTTAGTTATACCGAGAGTAGTGACGATGATGTAGA
TTTGCAAAAATCCAACATTTTGATGATTGGTCCAACTGGCTCAGGAAAAACCTTCTTAGCACAAACACTGGCTAAAAGCC
TTAATGTACCATTTGCTATTGCAGATGCGACTTCATTGACCGAAGCAGGATACGTTGGAGAAGATGTTGAGAATATTCTT
CTTAAATTGATTCAAGCTGCTGATTATAATGTCGAACGTGCTGAGCGTGGTATTATCTACGTTGATGAAATAGATAAAAT
TGCTAAGAAAGGCGAAAATGTTTCTATCACACGTGATGTATCTGGTGAAGGTGTACAGCAAGCCCTTCTTAAAATTATTG
AGGGTACGGTAGCAAGTGTTCCCCCACAGGGTGGGCGTAAACATCCTAACCAAGAAATGATTCAAATTAATACCAAGAAC
ATCCTTTTTATTGTCGGTGGTGCTTTTGATGGTATTGAAGACCTTGTGAAGCAACGTTTAGGCGAAAAAGTTATTGGTTT
TGGACAGACAAGCCGCAAAATTGATGACAACGCTTCTTATATGCAAGAGATAATTTCTGAGGATATTCAAAAGTTTGGAC
TGATTCCAGAGTTTATTGGCCGTTTACCAGTAGTTGCAGCGTTAGAACTTCTTACTGCAGAAGATCTGGTTCGTATTCTG
ACAGAACCACGCAATGCTTTGGTTAAACAATACCAAACCTTATTATCTTATGATGGTGTAGAATTGGAATTTGATCAGGA
TGCTCTATTGGCTATCGCTGATAAGGCTATCGAGCGCAAGACTGGTGCACGTGGTTTACGTTCTATTATTGAAGAAACGA
TGCTTGATATCATGTTTGAAATTCCAAGCCAAGAAGATGTAACAAAAGTTCGTATCACAAAGGCTGCTGTTGAGGGTACT
GACAAGCCTGTTTTAGAGACGGCTTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

90.465

100

0.907
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.25

98.039

0.571