Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   P8R98_RS02540 Genome accession   NZ_CP121159
Coordinates   470497..471756 (+) Length   419 a.a.
NCBI ID   WP_000900646.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 451145..478939 470497..471756 within 0


Gene organization within MGE regions


Location: 451145..478939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS02450 - 451145..451378 (+) 234 WP_000693749.1 hypothetical protein -
  P8R98_RS02460 - 452721..454223 (+) 1503 Protein_437 tyrosine-type recombinase/integrase -
  P8R98_RS02465 lacD 454402..455381 (+) 980 Protein_438 tagatose-bisphosphate aldolase -
  P8R98_RS02470 - 455435..456331 (+) 897 WP_001018630.1 aldose 1-epimerase family protein -
  P8R98_RS02475 - 456426..457277 (+) 852 WP_278043491.1 helix-turn-helix domain-containing protein -
  P8R98_RS02480 ugpC 457378..458511 (+) 1134 WP_000229966.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  P8R98_RS02485 - 458640..460247 (+) 1608 WP_000716726.1 alpha-glucosidase -
  P8R98_RS02490 galE 460335..461330 (+) 996 WP_000279626.1 UDP-glucose 4-epimerase GalE -
  P8R98_RS02495 - 461280..462029 (-) 750 WP_000382774.1 response regulator -
  P8R98_RS02500 - 462031..463506 (-) 1476 Protein_445 cache domain-containing protein -
  P8R98_RS02505 - 463728..465047 (+) 1320 WP_309136460.1 2-hydroxycarboxylate transporter family protein -
  P8R98_RS02510 - 465059..466222 (+) 1164 WP_001293703.1 NADP-dependent malic enzyme -
  P8R98_RS02515 - 466355..467824 (+) 1470 WP_000468678.1 IS1182-like element IS1563 family transposase -
  P8R98_RS02520 - 467976..468320 (+) 345 WP_000286792.1 thioredoxin domain-containing protein -
  P8R98_RS02525 yajC 468397..468738 (+) 342 WP_000056607.1 preprotein translocase subunit YajC -
  P8R98_RS02530 - 468905..469657 (+) 753 WP_000469560.1 isoprenyl transferase -
  P8R98_RS02535 - 469672..470466 (+) 795 WP_000664686.1 phosphatidate cytidylyltransferase -
  P8R98_RS02540 eeP 470497..471756 (+) 1260 WP_000900646.1 RIP metalloprotease RseP Regulator
  P8R98_RS02545 - 471848..473701 (+) 1854 WP_000814039.1 proline--tRNA ligase -
  P8R98_RS02550 - 473826..474410 (+) 585 WP_000842268.1 glycoside hydrolase family 73 protein -
  P8R98_RS02555 - 474533..478939 (+) 4407 WP_001292134.1 PolC-type DNA polymerase III -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46093.12 Da        Isoelectric Point: 10.0321

>NTDB_id=810606 P8R98_RS02540 WP_000900646.1 470497..471756(+) (eeP) [Streptococcus agalactiae strain S1]
MLGILTFIIIFGVIVVVHEFGHFYFAKKSGILVREFAIGMGPKIFSHIDKEGTTYTIRILPLGGYVRMAGWGDDKTEIKT
GTPANLTLNKEGIVTRINLSGKQLDNTSLPINVTAYDLEDKLTITGLVLSETKTYSVDHDATIIEEDGTEVRIAPLDVQY
QNASVWGRLITNFAGPMNNFILGLVVFIALAFIQGGVQDLSTNQVRVSENGPAASAGLKNNDRILQIGSHKVSNWEQLTA
AVEKSTSRLEKNQKLALKIKSKEVVKTINVKPQKVDKSYIIGIMPALKTSFKDKLLGGFKLAWESFFRILNELKKLIAHF
SINKLGGPVALYQASSQAAKNGFVTVLNLMGLISINLGIMNLIPIPALDGGKIVMNILEAIRRKPLKQETETYIMLAGVA
VMLVLMIAVTWNDIMRAFF

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=810606 P8R98_RS02540 WP_000900646.1 470497..471756(+) (eeP) [Streptococcus agalactiae strain S1]
ATGCTAGGAATTTTAACCTTTATTATTATTTTTGGTGTCATTGTAGTTGTTCACGAATTTGGGCATTTCTATTTTGCAAA
GAAATCAGGAATTCTTGTTCGTGAATTTGCTATTGGTATGGGTCCAAAAATCTTTTCTCACATTGATAAAGAAGGAACAA
CCTATACTATTCGTATATTACCGCTAGGTGGTTATGTCCGTATGGCTGGTTGGGGTGATGATAAGACTGAAATTAAGACA
GGGACGCCGGCTAACCTTACTTTAAATAAAGAAGGCATTGTAACTCGTATTAATTTATCAGGAAAACAATTAGACAATAC
TTCTTTACCAATTAATGTAACAGCTTATGATTTAGAAGATAAACTAACTATCACAGGATTGGTCTTAAGTGAGACAAAAA
CCTATAGTGTTGATCACGATGCTACTATCATTGAGGAGGATGGTACTGAAGTTCGTATTGCTCCCTTAGATGTGCAGTAT
CAGAATGCTTCTGTATGGGGGCGCTTAATTACCAATTTTGCAGGTCCGATGAATAATTTTATTTTAGGTCTTGTAGTCTT
TATTGCACTTGCTTTTATTCAAGGGGGTGTTCAAGATTTATCAACCAATCAGGTCCGTGTATCAGAAAATGGTCCTGCTG
CTAGTGCAGGTTTGAAAAATAATGACCGTATTTTACAAATAGGGTCGCACAAAGTTTCTAACTGGGAACAGTTGACAGCA
GCAGTAGAAAAGTCAACTAGTCGTTTAGAAAAAAACCAAAAACTTGCTCTTAAGATTAAGAGTAAAGAGGTGGTGAAAAC
GATCAACGTTAAGCCACAGAAAGTTGATAAATCCTACATCATCGGCATTATGCCAGCTCTAAAGACAAGCTTTAAAGACA
AGCTTTTAGGTGGATTTAAACTAGCATGGGAAAGTTTCTTTAGAATTTTAAATGAATTAAAGAAACTTATTGCTCATTTT
AGTATTAATAAATTGGGAGGTCCAGTAGCTCTCTATCAGGCTAGTAGCCAAGCTGCTAAAAATGGTTTCGTCACAGTTCT
CAACTTAATGGGATTAATCTCTATCAACTTAGGTATTATGAATCTCATCCCTATACCAGCCCTTGACGGGGGTAAGATAG
TGATGAATATTTTAGAAGCCATTCGTCGCAAACCACTTAAACAAGAAACAGAAACTTATATTATGCTCGCTGGGGTAGCA
GTTATGTTAGTATTAATGATTGCTGTAACCTGGAACGATATCATGCGAGCTTTCTTCTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(6-405)

PDZ domain (PDZ_2)

(205-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

69.048

100

0.692
  eeP Streptococcus thermophilus LMD-9

68.81

100

0.69