Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   HT078_RS08280 Genome accession   NZ_AP023071
Coordinates   1603285..1603929 (-) Length   214 a.a.
NCBI ID   WP_047918176.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM15748     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1598285..1608929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT078_RS08245 (TUM15748C_16180) ftsL 1598766..1599029 (-) 264 WP_003701583.1 cell division protein FtsL -
  HT078_RS08250 (TUM15748C_16190) rsmH 1599056..1600012 (-) 957 WP_003689462.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  HT078_RS08255 (TUM15748C_16200) mraZ 1600009..1600464 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  HT078_RS08260 (TUM15748C_16210) - 1600743..1601990 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  HT078_RS08275 (TUM15748C_16220) - 1602431..1603252 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  HT078_RS08280 (TUM15748C_16230) dsbA1 1603285..1603929 (-) 645 WP_047918176.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  HT078_RS08285 (TUM15748C_16240) ftsN 1603932..1604795 (-) 864 WP_010360712.1 cell division protein FtsN -
  HT078_RS08290 (TUM15748C_16250) comM 1604901..1606397 (-) 1497 WP_012503875.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HT078_RS08295 (TUM15748C_16260) - 1606411..1606731 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  HT078_RS08300 (TUM15748C_16270) putP 1607220..1608746 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24031.13 Da        Isoelectric Point: 9.9225

>NTDB_id=81039 HT078_RS08280 WP_047918176.1 1603285..1603929(-) (dsbA1) [Neisseria gonorrhoeae strain TUM15748]
MKFKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQPGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDTYLRTEH
VVWRPEMLGLARMAAAVKLSGLKYQANSAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAVVALKMQK
LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=81039 HT078_RS08280 WP_047918176.1 1603285..1603929(-) (dsbA1) [Neisseria gonorrhoeae strain TUM15748]
ATGAAGTTTAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGCCGGGAAAAATTGAGGTTTTGGAATTTTTCGGCTATTTTTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATACTTATCTGCGGACGGAGCAC
GTGGTCTGGCGGCCTGAAATGCTCGGTCTGGCAAGAATGGCTGCTGCGGTCAAGCTGTCGGGTTTGAAATATCAGGCAAA
CTCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGTTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTATCTC
AAAAAGGTTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGTCGTCGCATTAAAAATGCAGAAA
CTGACGGAACAATACGGTATTGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAATGGCTT
TGATGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

56.684

87.383

0.495
  dsbA2 Neisseria meningitidis MC58

52.151

86.916

0.453

Multiple sequence alignment