Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HT078_RS07030 Genome accession   NZ_AP023071
Coordinates   1350198..1351001 (+) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae strain TUM15748     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1345198..1356001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT078_RS07000 (TUM15748C_13760) holA 1345212..1346210 (-) 999 WP_003687654.1 DNA polymerase III subunit delta -
  HT078_RS07005 (TUM15748C_13770) lptE 1346212..1346691 (-) 480 WP_003692715.1 LPS assembly lipoprotein LptE -
  HT078_RS07010 (TUM15748C_13780) pgeF 1346743..1347522 (-) 780 WP_003690756.1 peptidoglycan editing factor PgeF -
  HT078_RS07015 - 1347674..1347898 (+) 225 WP_225577482.1 hypothetical protein -
  HT078_RS07020 (TUM15748C_13790) - 1347975..1348922 (+) 948 Protein_1372 bile acid:sodium symporter family protein -
  HT078_RS07025 (TUM15748C_13800) rluD 1349075..1350199 (-) 1125 WP_146711073.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HT078_RS07030 (TUM15748C_13810) comL 1350198..1351001 (+) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  HT078_RS07035 (TUM15748C_13820) comA 1351071..1353290 (-) 2220 WP_172760400.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HT078_RS07040 - 1353322..1353597 (+) 276 WP_153707850.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=81031 HT078_RS07030 WP_003687645.1 1350198..1351001(+) (comL) [Neisseria gonorrhoeae strain TUM15748]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=81031 HT078_RS07030 WP_003687645.1 1350198..1351001(+) (comL) [Neisseria gonorrhoeae strain TUM15748]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment