Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   RO838_RS03290 Genome accession   NZ_CP135134
Coordinates   763748..765550 (-) Length   600 a.a.
NCBI ID   WP_057683402.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 758748..770550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO838_RS03265 (RO838_03265) trpA 759375..760181 (+) 807 WP_057683399.1 tryptophan synthase subunit alpha -
  RO838_RS03270 (RO838_03270) - 760284..760406 (+) 123 WP_316666890.1 hypothetical protein -
  RO838_RS03275 (RO838_03275) radA/sms 760419..761810 (-) 1392 WP_057683400.1 DNA repair protein RadA Machinery gene
  RO838_RS03280 (RO838_03280) - 761980..762945 (+) 966 WP_004090672.1 LLM class flavin-dependent oxidoreductase -
  RO838_RS03285 (RO838_03285) - 763146..763625 (-) 480 WP_057683401.1 hypothetical protein -
  RO838_RS03290 (RO838_03290) recQ 763748..765550 (-) 1803 WP_057683402.1 DNA helicase RecQ Machinery gene
  RO838_RS03295 (RO838_03295) - 765730..766272 (-) 543 WP_057683403.1 Dps family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 67508.21 Da        Isoelectric Point: 8.5285

>NTDB_id=810169 RO838_RS03290 WP_057683402.1 763748..765550(-) (recQ) [Xylella fastidiosa strain CFBP8478]
MSTSSATQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVISPLIALMQDQVETLR
QLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERLLTAHFLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLT
VLHERWPHVPRIALTATADPPTQREIAERLDLSDAHHFISSFDRPNIRYTVVQKNNMRRQLQEFLSRHRNTAGIVYAMSR
RKTEEIAAYLCTQGYNALPYHAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR
AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLLLSSFGETYPNPCGNCDNCLT
PATAWNATVLSQKALSCVYRTGQRFGVGHLIDILRGSKSQRILQLGHDQLSTYGIGRDVDERSWRSVFRQLVATHLLEVD
NEGYGGLRLTPSSRPVLKGERQVMMRRDQFIRERDRTGQRHGLSVLPEDLGLFNALHRLRAQLAKEQNVPAFVIFHDSTL
RHIAEQRPTNINALSKINGIGSNKLTRYGHQLIELVLAQG

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=810169 RO838_RS03290 WP_057683402.1 763748..765550(-) (recQ) [Xylella fastidiosa strain CFBP8478]
ATGAGCACGTCTTCCGCCACCCAGACCGTTCTACAACGCGTCTTTGGCTACGACACCTTCCGTGGGCCCCAGCAAGCCAT
CATTGAGCATGTCGCTGCCGGCCACGATGCCTTGGTCCTGATGCCCACCGGGGGCGGCAAATCATTGTGCTACCAAGTGC
CTGCGCTGCTGCGCAAAGGCATCGGCGTCGTCATCTCGCCGCTGATTGCACTGATGCAAGACCAAGTCGAGACCCTACGT
CAGCTTGGCGTACGCGCCGCCTACCTCAACTCGACCCTAGATGCAACGCAGGCACAACGGATCGAACACGCTCTAGTCAC
CGCAGATCTAGACCTGCTGTATATCGCTCCGGAACGGTTACTCACTGCACACTTCTTATCGCTGCTGGAACGTAGCCAGA
TCGCTTTGTTCGCAATAGACGAAGCTCACTGCGTCTCACAGTGGGGCCATGATTTCCGTCCCGAATACCGCCAACTCACC
GTACTTCATGAACGTTGGCCACACGTGCCTCGGATTGCACTGACCGCAACCGCCGACCCACCCACGCAACGCGAAATTGC
TGAGCGCCTTGACCTAAGCGATGCGCATCACTTCATCAGCTCATTCGACCGCCCCAACATCCGCTACACGGTCGTGCAGA
AAAACAATATGCGGCGCCAACTACAAGAATTCCTCAGCCGCCATCGCAACACCGCAGGCATTGTCTACGCCATGTCACGG
CGCAAAACCGAAGAAATCGCCGCCTATCTGTGTACACAAGGCTACAACGCACTGCCTTACCATGCCGGCCTACCAGCCGA
AACACGGGCCAAGCACCAACGCTGCTTTCTGCGTGAAGAAGGGATTGTGATGTGTGCCACCATCGCCTTCGGCATGGGCA
TCAACAAACCTGATGTCCGCTTTGTCGCCCACATCGACCTCCCCAAATCACTGGAGGGTTATTACCAGGAAACCGGCCGC
GCCGGCCGCGATGGCGAAGCTGCAGAAGCATGGATGTGCTATAGCCTGGGAGACGTCGTACTGCTGAAACAAATGATCGA
ACAAAGCGAAGCCAGCGAAGCACGCAAGTGCGTAGAACGCGCCAAACTCGATCACCTGCTGGGCTACTGCGAATCAATGC
AATGCCGCCGCCAACTCTTACTGTCCAGCTTCGGGGAAACCTATCCAAACCCCTGTGGCAACTGTGACAACTGCCTGACC
CCAGCCACCGCCTGGAATGCCACCGTGCTCTCCCAAAAGGCGTTAAGTTGCGTCTACCGCACTGGCCAGCGCTTCGGGGT
TGGTCACCTCATCGACATACTACGTGGCAGTAAGAGCCAAAGAATATTGCAACTGGGTCATGACCAACTCAGCACCTACG
GCATCGGCCGTGACGTGGATGAACGCAGCTGGCGCAGTGTCTTTCGCCAACTCGTCGCCACACACCTGTTAGAGGTCGAC
AACGAAGGCTACGGCGGCTTACGCCTGACCCCAAGCAGTCGTCCAGTCCTCAAAGGCGAACGCCAAGTCATGATGCGTCG
TGATCAGTTCATCCGTGAACGCGACCGTACCGGCCAACGTCACGGACTATCGGTCCTTCCGGAAGATCTGGGACTCTTCA
ATGCCCTGCATCGCTTACGTGCACAACTCGCCAAAGAACAAAACGTGCCGGCATTCGTGATCTTCCATGACAGCACCTTG
CGCCATATTGCCGAGCAACGCCCTACCAACATCAATGCACTGAGCAAAATCAACGGGATCGGCAGCAACAAACTGACACG
CTATGGCCATCAGTTAATTGAACTCGTACTTGCGCAAGGGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-324)

DEAD/DEAH box helicase (DEAD)

(24-179)

RecQ zinc-binding (RecQ_Zn_bind)

(337-399)

HRDC domain (HRDC)

(530-596)

RQC domain (RQC)

(403-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.111

98.833

0.377