Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD2   Type   Regulator
Locus tag   QN339_RS09345 Genome accession   NZ_CP135104
Coordinates   1860780..1861079 (-) Length   99 a.a.
NCBI ID   WP_000002567.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MA15     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1855780..1866079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN339_RS09320 (QN339_09310) - 1856205..1856696 (-) 492 WP_000632641.1 PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB -
  QN339_RS09325 (QN339_09315) - 1856714..1857139 (-) 426 WP_000823117.1 PTS mannose transporter subunit IIA -
  QN339_RS09330 (QN339_09320) - 1857386..1858420 (-) 1035 WP_000369175.1 acyltransferase family protein -
  QN339_RS09335 (QN339_09325) - 1858649..1859803 (-) 1155 WP_000623425.1 ABC transporter permease subunit -
  QN339_RS09340 (QN339_09330) - 1859809..1860657 (-) 849 WP_000926582.1 ABC transporter ATP-binding protein -
  QN339_RS09345 (QN339_09335) comD/comD2 1860780..1861079 (-) 300 WP_000002567.1 GHKL domain-containing protein Regulator
  QN339_RS09350 (QN339_09340) comE/blpR 1861148..1861900 (-) 753 WP_410534274.1 response regulator transcription factor Regulator
  QN339_RS09355 (QN339_09345) - 1862175..1862990 (-) 816 WP_410534275.1 endonuclease/exonuclease/phosphatase family protein -
  QN339_RS09360 (QN339_09350) - 1863044..1865227 (-) 2184 WP_000795065.1 PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11343.79 Da        Isoelectric Point: 5.0958

>NTDB_id=810077 QN339_RS09345 WP_000002567.1 1860780..1861079(-) (comD/comD2) [Streptococcus agalactiae strain MA15]
MANMIDYSHHIEVSLETDEPKIAMSYFTLNHKQIFIIENSIVEERIDASRLFGYGASSKGEDRGLGLYNVMKVIDRYPNA
SISTNSEQHTFRQGLEIIF

Nucleotide


Download         Length: 300 bp        

>NTDB_id=810077 QN339_RS09345 WP_000002567.1 1860780..1861079(-) (comD/comD2) [Streptococcus agalactiae strain MA15]
TTGGCTAATATGATAGATTATAGCCACCATATTGAAGTTTCTTTAGAGACAGATGAACCTAAGATAGCCATGTCTTATTT
TACATTAAACCATAAGCAAATTTTTATCATAGAAAATTCGATAGTCGAGGAAAGAATAGATGCTTCACGTTTGTTTGGTT
ATGGAGCAAGTAGCAAGGGAGAAGATAGAGGGTTAGGCCTTTATAATGTCATGAAAGTTATTGACCGTTATCCCAATGCA
TCTATTAGTACAAATAGTGAACAACATACTTTCCGTCAGGGCTTAGAAATAATCTTTTAG

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(11-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD2 Streptococcus equinus JB1

40.86

93.939

0.384
  comD/comD3 Streptococcus equinus JB1

38.71

93.939

0.364