Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   QN329_RS01010 Genome accession   NZ_CP135103
Coordinates   178311..178682 (-) Length   123 a.a.
NCBI ID   WP_000601103.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU36/21     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 173311..183682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN329_RS00975 (QN329_00975) proC 173423..174193 (+) 771 WP_001867096.1 pyrroline-5-carboxylate reductase -
  QN329_RS00980 (QN329_00980) - 174214..174879 (-) 666 WP_000008107.1 CPBP family intramembrane glutamic endopeptidase -
  QN329_RS00985 (QN329_00985) - 174948..175340 (-) 393 WP_001265365.1 hypothetical protein -
  QN329_RS00990 (QN329_00990) - 175443..175580 (-) 138 WP_079263416.1 hypothetical protein -
  QN329_RS00995 (QN329_00995) - 175639..175845 (-) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  QN329_RS01000 (QN329_01000) - 175997..177190 (-) 1194 WP_000047537.1 acetate kinase -
  QN329_RS01005 (QN329_01005) comGH 177222..178196 (-) 975 WP_001008568.1 class I SAM-dependent methyltransferase Machinery gene
  QN329_RS01010 (QN329_01010) comGG 178311..178682 (-) 372 WP_000601103.1 competence type IV pilus minor pilin ComGG Machinery gene
  QN329_RS01015 (QN329_01015) comGF 178660..179115 (-) 456 WP_000793378.1 competence type IV pilus minor pilin ComGF Machinery gene
  QN329_RS01020 (QN329_01020) comGB 179112..180155 (-) 1044 WP_228322108.1 competence type IV pilus assembly protein ComGB Machinery gene
  QN329_RS01025 (QN329_01025) comGA 180049..181020 (-) 972 WP_000250799.1 competence type IV pilus ATPase ComGA Machinery gene
  QN329_RS01030 (QN329_01030) - 181192..181557 (-) 366 WP_000285373.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13891.14 Da        Isoelectric Point: 10.0693

>NTDB_id=809901 QN329_RS01010 WP_000601103.1 178311..178682(-) (comGG) [Streptococcus agalactiae strain HU36/21]
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFTGGYASYLQ
EGNYLQVKVTLDKGGNYNHKFYRKIDTLQVPLKSNDNKASHKH

Nucleotide


Download         Length: 372 bp        

>NTDB_id=809901 QN329_RS01010 WP_000601103.1 178311..178682(-) (comGG) [Streptococcus agalactiae strain HU36/21]
ATGATTTTAAAGAAGAAACTTAAAGCTGGTATCCTTTTGCAAGCTATTGTATTGGCTGCTGTATTTACACTCGTCTTACA
GTTTTATCTAGCAAGAATATTGGCAACAGAAAGACAGTATCATAGCCAAATTGAAGCAAGTAAAGCTTATTTAACAGCGC
AGTTAGCTTATAAAACAATAGAAGGTGACTCCATATCAGGAAAATGTTATTTTACAGGAGGATATGCTTCATACCTCCAA
GAAGGGAACTATTTACAAGTTAAGGTTACATTGGATAAGGGAGGAAACTATAACCATAAGTTTTATCGTAAAATAGACAC
TCTCCAAGTACCTCTCAAGTCTAATGATAATAAAGCAAGCCATAAACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.554

82.114

0.366
  comGG Streptococcus mutans UA159

44.554

82.114

0.366