Detailed information NTG0080972

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OO978_RS22205
• Genome accession: NZ_AP026783
• Coordinates: 4568240..4569265 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain IPCEC31
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4563240..4574265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO978_RS22195 (IPCEC31_42920)	rpmE	4565471..4565683 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
OO978_RS22200 (IPCEC31_42930)	priA	4565886..4568084 (+)	2199	WP_001324365.1	primosomal protein N'	Machinery gene
OO978_RS22205 (IPCEC31_42940)	cytR	4568240..4569265 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
OO978_RS22210 (IPCEC31_42950)	ftsN	4569357..4570316 (+)	960	WP_000068837.1	cell division protein FtsN	-
OO978_RS22215 (IPCEC31_42960)	hslV	4570409..4570939 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OO978_RS22220 (IPCEC31_42970)	hslU	4570949..4572280 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
OO978_RS22225 (IPCEC31_42980)	menA	4572347..4573273 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OO978_RS22230 (IPCEC31_42990)	rraA	4573366..4573851 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OO978_RS22235 (IPCEC31_43000)	zapB	4573936..4574181 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=80972 OO978_RS22205 WP_000644904.1 4568240..4569265(+) (cytR) [Escherichia coli strain IPCEC31]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=80972 OO978_RS22205 WP_000644904.1 4568240..4569265(+) (cytR) [Escherichia coli strain IPCEC31]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628