Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HT085_RS01790 Genome accession   NZ_AP023069
Coordinates   349917..350720 (-) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae strain TUM19854     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 344917..355720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT085_RS01780 - 347321..347596 (-) 276 WP_153707850.1 hypothetical protein -
  HT085_RS01785 (TUM19854C_03230) comA 347628..349847 (+) 2220 WP_154236097.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HT085_RS01790 (TUM19854C_03240) comL 349917..350720 (-) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  HT085_RS01795 (TUM19854C_03250) rluD 350719..351843 (+) 1125 WP_172763932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HT085_RS01800 (TUM19854C_03260) - 351996..352943 (-) 948 Protein_343 bile acid:sodium symporter family protein -
  HT085_RS11540 - 353020..353244 (-) 225 WP_225577482.1 hypothetical protein -
  HT085_RS01805 (TUM19854C_03270) pgeF 353397..354176 (+) 780 WP_003690756.1 peptidoglycan editing factor PgeF -
  HT085_RS01810 (TUM19854C_03280) lptE 354228..354707 (+) 480 WP_003690758.1 LPS assembly lipoprotein LptE -
  HT085_RS01815 (TUM19854C_03290) holA 354709..355707 (+) 999 WP_003690761.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=80971 HT085_RS01790 WP_003687645.1 349917..350720(-) (comL) [Neisseria gonorrhoeae strain TUM19854]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=80971 HT085_RS01790 WP_003687645.1 349917..350720(-) (comL) [Neisseria gonorrhoeae strain TUM19854]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment