Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   RPM50_RS19870 Genome accession   NZ_CP135099
Coordinates   4360497..4361522 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain Paer3125     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4355497..4366522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM50_RS19845 (RPM50_19845) - 4355686..4356003 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  RPM50_RS19850 (RPM50_19850) trkA 4356152..4357525 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  RPM50_RS19855 (RPM50_19855) rsmB 4357552..4358856 (-) 1305 WP_023095007.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  RPM50_RS19860 (RPM50_19860) fmt 4358853..4359797 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  RPM50_RS19865 (RPM50_19865) def 4359852..4360358 (-) 507 WP_003107059.1 peptide deformylase -
  RPM50_RS19870 (RPM50_19870) tsaP 4360497..4361522 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RPM50_RS19875 (RPM50_19875) dprA 4361657..4362745 (+) 1089 WP_015502109.1 DNA-processing protein DprA Machinery gene
  RPM50_RS19880 (RPM50_19880) - 4362786..4363343 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  RPM50_RS19885 (RPM50_19885) - 4363353..4364330 (-) 978 WP_033991581.1 quinone oxidoreductase family protein -
  RPM50_RS19890 (RPM50_19890) hemF 4364521..4365438 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  RPM50_RS19895 (RPM50_19895) aroE 4365496..4366320 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=809647 RPM50_RS19870 WP_003097294.1 4360497..4361522(+) (tsaP) [Pseudomonas aeruginosa strain Paer3125]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=809647 RPM50_RS19870 WP_003097294.1 4360497..4361522(+) (tsaP) [Pseudomonas aeruginosa strain Paer3125]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393