Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RPM50_RS19875 Genome accession   NZ_CP135099
Coordinates   4361657..4362745 (+) Length   362 a.a.
NCBI ID   WP_015502109.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Paer3125     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4356657..4367745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM50_RS19855 (RPM50_19855) rsmB 4357552..4358856 (-) 1305 WP_023095007.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  RPM50_RS19860 (RPM50_19860) fmt 4358853..4359797 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  RPM50_RS19865 (RPM50_19865) def 4359852..4360358 (-) 507 WP_003107059.1 peptide deformylase -
  RPM50_RS19870 (RPM50_19870) tsaP 4360497..4361522 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  RPM50_RS19875 (RPM50_19875) dprA 4361657..4362745 (+) 1089 WP_015502109.1 DNA-processing protein DprA Machinery gene
  RPM50_RS19880 (RPM50_19880) - 4362786..4363343 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  RPM50_RS19885 (RPM50_19885) - 4363353..4364330 (-) 978 WP_033991581.1 quinone oxidoreductase family protein -
  RPM50_RS19890 (RPM50_19890) hemF 4364521..4365438 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  RPM50_RS19895 (RPM50_19895) aroE 4365496..4366320 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  RPM50_RS19900 (RPM50_19900) - 4366431..4367417 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37729.28 Da        Isoelectric Point: 7.0742

>NTDB_id=809648 RPM50_RS19875 WP_015502109.1 4361657..4362745(+) (dprA) [Pseudomonas aeruginosa strain Paer3125]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPVQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=809648 RPM50_RS19875 WP_015502109.1 4361657..4362745(+) (dprA) [Pseudomonas aeruginosa strain Paer3125]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGTCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGATGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGAATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATCCCGGGCTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGTGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.09

97.79

0.412
  dprA Acinetobacter baumannii D1279779

37.569

100

0.376
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367