Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RPM50_RS18380 Genome accession   NZ_CP135099
Coordinates   4036734..4037408 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain Paer3125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4031734..4042408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM50_RS18355 (RPM50_18355) - 4032156..4033490 (+) 1335 WP_033991420.1 aspartate aminotransferase family protein -
  RPM50_RS18360 (RPM50_18360) - 4033556..4033918 (+) 363 WP_003096551.1 cupin domain-containing protein -
  RPM50_RS18365 (RPM50_18365) rpmG 4034055..4034210 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  RPM50_RS18370 (RPM50_18370) rpmB 4034222..4034458 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  RPM50_RS18375 (RPM50_18375) - 4034814..4036394 (+) 1581 WP_023100059.1 ABC transporter substrate-binding protein -
  RPM50_RS18380 (RPM50_18380) radC 4036734..4037408 (-) 675 WP_003096559.1 RadC family protein Machinery gene
  RPM50_RS18385 (RPM50_18385) coaBC 4037548..4038756 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  RPM50_RS18390 (RPM50_18390) dut 4038764..4039219 (+) 456 WP_003096567.1 dUTP diphosphatase -
  RPM50_RS18395 (RPM50_18395) - 4039256..4041868 (+) 2613 WP_033991423.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=809637 RPM50_RS18380 WP_003096559.1 4036734..4037408(-) (radC) [Pseudomonas aeruginosa strain Paer3125]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=809637 RPM50_RS18380 WP_003096559.1 4036734..4037408(-) (radC) [Pseudomonas aeruginosa strain Paer3125]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGTTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACCGCGCGCCTGAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCTCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397