Detailed information NTG0809598

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PYR84_RS24765
• Genome accession: NZ_CP120956
• Coordinates: 5448373..5449266 (+)
• Length: 297 a.a.
• NCBI ID: WP_277848923.1
• Uniprot ID: A0AAX3SJ18
• Organism: Delftia tsuruhatensis strain Ery-6A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5443373..5454266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PYR84_RS24735 (PYR84_24735)	rpmA	5443394..5443651 (-)	258	WP_012207283.1	50S ribosomal protein L27	-
PYR84_RS24740 (PYR84_24740)	rplU	5443667..5443978 (-)	312	WP_012207284.1	50S ribosomal protein L21	-
PYR84_RS24745 (PYR84_24745)	-	5444209..5445138 (+)	930	WP_277849943.1	polyprenyl synthetase family protein	-
PYR84_RS24755 (PYR84_24755)	pilB	5445375..5447117 (+)	1743	WP_034364744.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PYR84_RS24760 (PYR84_24760)	pilC	5447156..5448373 (+)	1218	WP_047326532.1	type II secretion system F family protein	Machinery gene
PYR84_RS24765 (PYR84_24765)	pilD	5448373..5449266 (+)	894	WP_277848923.1	A24 family peptidase	Machinery gene
PYR84_RS24770 (PYR84_24770)	coaE	5449281..5449919 (+)	639	WP_016445608.1	dephospho-CoA kinase	-
PYR84_RS24775 (PYR84_24775)	zapD	5450009..5450764 (+)	756	WP_016445607.1	cell division protein ZapD	-
PYR84_RS24780 (PYR84_24780)	-	5450782..5451018 (+)	237	WP_223275109.1	DNA gyrase inhibitor YacG	-
PYR84_RS24785 (PYR84_24785)	mutT	5451029..5451535 (-)	507	WP_043789746.1	8-oxo-dGTP diphosphatase MutT	-
PYR84_RS24790 (PYR84_24790)	-	5451586..5452542 (-)	957	WP_047217092.1	ATP-binding protein	-
PYR84_RS24795 (PYR84_24795)	argJ	5452708..5453940 (-)	1233	WP_016445603.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31876.39 Da
• Isoelectric Point: 6.9135

>NTDB_id=809598 PYR84_RS24765 WP_277848923.1 5448373..5449266(+) (pilD) [Delftia tsuruhatensis strain Ery-6A]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGFTPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=809598 PYR84_RS24765 WP_277848923.1 5448373..5449266(+) (pilD) [Delftia tsuruhatensis strain Ery-6A]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAACAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGCAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCACCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCACTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCT
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCTTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCACTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.943	95.286	0.495
pilD	Vibrio campbellii strain DS40M4	46.758	98.653	0.461
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407