Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HT079_RS10875 Genome accession   NZ_AP023067
Coordinates   2076241..2076711 (-) Length   156 a.a.
NCBI ID   WP_172760459.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM19853     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2071241..2081711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT079_RS10855 (TUM19853C_20650) - 2071641..2072516 (-) 876 WP_003686971.1 NUDIX domain-containing protein -
  HT079_RS10865 (TUM19853C_20660) thiC 2073114..2075015 (+) 1902 WP_047916857.1 phosphomethylpyrimidine synthase ThiC -
  HT079_RS12180 - 2075457..2075819 (-) 363 Protein_2096 pilin -
  HT079_RS12185 - 2075859..2076214 (-) 356 Protein_2097 pilin -
  HT079_RS10875 (TUM19853C_20680) pilE 2076241..2076711 (-) 471 WP_172760459.1 pilin Machinery gene
  HT079_RS10880 - 2076816..2076896 (-) 81 Protein_2099 pilin -
  HT079_RS10885 (TUM19853C_20690) - 2077014..2077355 (-) 342 Protein_2100 pilin -
  HT079_RS10890 (TUM19853C_20700) - 2077359..2077667 (+) 309 Protein_2101 NAD(P)-dependent oxidoreductase -
  HT079_RS10895 (TUM19853C_20710) metG 2077742..2079796 (-) 2055 WP_172760465.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16880.80 Da        Isoelectric Point: 8.4923

>NTDB_id=80957 HT079_RS10875 WP_172760459.1 2076241..2076711(-) (pilE) [Neisseria gonorrhoeae strain TUM19853]
MTGFNDAAGNEKIDTKHLPSTCRDESSAVCTKHHAPISNTFAVAGYYLNHGEWPKDNTSAGVASPSDIKGKYVESVTVAK
GVVTAKMKPSGVNKEIKDKKLSLWARRENGSVKWFCGQPVTRNGDDKDDVAKAGNDNEKINTKHLPSTCRDESTAT

Nucleotide


Download         Length: 471 bp        

>NTDB_id=80957 HT079_RS10875 WP_172760459.1 2076241..2076711(-) (pilE) [Neisseria gonorrhoeae strain TUM19853]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATACTTTCGCCGTTGCCGGGTATTACCTGAATCACGGCGAATGGC
CGAAAGACAACACTTCTGCCGGCGTGGCATCCCCCTCCGACATCAAAGGCAAATATGTTGAAAGCGTTACGGTCGCAAAA
GGCGTCGTTACCGCCAAAATGAAACCAAGCGGCGTAAACAAAGAAATCAAAGACAAAAAACTCTCCCTGTGGGCCAGGCG
TGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAACGGCGACGACAAAGACGACGTCGCCAAAGCCG
GCAACGACAACGAAAAAATCAACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(42-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75.652

73.718

0.558
  pilE Neisseria gonorrhoeae MS11

71.053

73.077

0.519

Multiple sequence alignment