Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   RPM48_RS26060 Genome accession   NZ_CP135095
Coordinates   5567384..5568007 (-) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain Paer3771     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5562384..5573007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM48_RS26035 (RPM48_26035) - 5563166..5564089 (-) 924 WP_003097322.1 choline ABC transporter substrate-binding protein -
  RPM48_RS26040 (RPM48_26040) betC 5564106..5565617 (-) 1512 WP_003097323.1 choline-sulfatase -
  RPM48_RS26045 (RPM48_26045) - 5565730..5566644 (+) 915 WP_003122286.1 choline sulfate utilization transcriptional regulator -
  RPM48_RS26050 (RPM48_26050) - 5566655..5567032 (+) 378 WP_003097328.1 DOPA 4,5-dioxygenase family protein -
  RPM48_RS26055 (RPM48_26055) - 5567011..5567376 (-) 366 WP_003097330.1 Hpt domain-containing protein -
  RPM48_RS26060 (RPM48_26060) letA 5567384..5568007 (-) 624 WP_003111192.1 response regulator transcription factor Regulator
  RPM48_RS26065 (RPM48_26065) trpA 5568193..5568999 (-) 807 WP_003097337.1 tryptophan synthase subunit alpha -
  RPM48_RS26070 (RPM48_26070) trpB 5568996..5570204 (-) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  RPM48_RS26075 (RPM48_26075) trpI 5570308..5571195 (+) 888 WP_003097343.1 trpBA operon transcriptional activator TrpI -
  RPM48_RS26080 (RPM48_26080) - 5571296..5571511 (+) 216 WP_003097345.1 dodecin -
  RPM48_RS26085 (RPM48_26085) - 5571695..5571922 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=809356 RPM48_RS26060 WP_003111192.1 5567384..5568007(-) (letA) [Pseudomonas aeruginosa strain Paer3771]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=809356 RPM48_RS26060 WP_003111192.1 5567384..5568007(-) (letA) [Pseudomonas aeruginosa strain Paer3771]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAACACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362