Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RPM48_RS04980 Genome accession   NZ_CP135095
Coordinates   1052090..1054066 (+) Length   658 a.a.
NCBI ID   WP_023657200.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Paer3771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1047090..1059066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM48_RS04960 (RPM48_04960) - 1047912..1048190 (-) 279 WP_023657196.1 hypothetical protein -
  RPM48_RS04965 (RPM48_04965) - 1048171..1049385 (-) 1215 WP_023657197.1 glutathione-independent formaldehyde dehydrogenase -
  RPM48_RS04970 (RPM48_04970) - 1049853..1050794 (-) 942 WP_023657198.1 LysR family transcriptional regulator -
  RPM48_RS04975 (RPM48_04975) - 1051285..1051716 (+) 432 WP_023657199.1 DUF488 family protein -
  RPM48_RS04980 (RPM48_04980) uvrB 1052090..1054066 (+) 1977 WP_023657200.1 excinuclease ABC subunit UvrB Machinery gene
  RPM48_RS04985 (RPM48_04985) - 1054218..1055123 (-) 906 WP_023657201.1 LysR family transcriptional regulator -
  RPM48_RS04990 (RPM48_04990) - 1055278..1055685 (+) 408 WP_017514126.1 ketosteroid isomerase-related protein -
  RPM48_RS04995 (RPM48_04995) - 1055687..1056295 (+) 609 WP_023657202.1 hypothetical protein -
  RPM48_RS05000 (RPM48_05000) - 1056292..1057182 (+) 891 WP_023657203.1 carbon-nitrogen hydrolase family protein -
  RPM48_RS05005 (RPM48_05005) frmR 1057465..1057740 (+) 276 WP_023093413.1 formaldehyde-responsive transcriptional repressor FrmR -
  RPM48_RS05010 (RPM48_05010) - 1057800..1058909 (+) 1110 WP_011871467.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 74398.54 Da        Isoelectric Point: 5.1720

>NTDB_id=809285 RPM48_RS04980 WP_023657200.1 1052090..1054066(+) (uvrB) [Pseudomonas aeruginosa strain Paer3771]
MSTGMFILHSNYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILAPNKTLTAQLYGEMKH
FFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPDAYRALQI
ALSPGVKLNQRELIRRLALLQYDRTERTLKRATFRVQGDVIDIFPADSEHRAVRVELLDDTVASVQWMDPVTGKTLGEID
HYLVSPKTLFAPPTNKIDSASKKILADMEERVDELNRNNRLVEANRLYERITHDVEMMREVGYCSGMENYSCYFSDRDAA
SPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKDTLIDYGFRLPSSKNNRPLNFDEFEKVKPQTVFVSATPGEY
ELRVSKGRVVEQVIRPTGLLDPKVEVRKADGYIDDLLAEISKCVKRKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSD
IKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMIGRVARNENGKAILYADAVTP
AMKQAIDETNRRRQLQIAFNEENGISPASSVRKLAGEETNTEEPTVHSEAFCENLSDLCDQITAKEQQLLEFTDTGDEQR
VEDIRRQLDGLYRQFIYI

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=809285 RPM48_RS04980 WP_023657200.1 1052090..1054066(+) (uvrB) [Pseudomonas aeruginosa strain Paer3771]
ATGTCAACCGGTATGTTTATTCTGCACTCCAACTATACGCCGGCGGGGGACCAGCCAGAGGCGATAGCGCGCCTGCTGTC
GGACATAGAAGAAGGTGCGACGCACCAGACGCTGAAAGGTATCACCGGCTCAGGTAAGACCTTCACCATGGCCAATGTGA
TTCATCGTCTGAAGCGGCCTACGTTGATCTTGGCTCCTAACAAGACGTTGACCGCGCAGCTTTATGGTGAAATGAAGCAC
TTCTTTCCTGAGAACGCGGTCGAGTACTTCGTTTCCTACTACGATTATTTTCAGCCCGAAATCTATATGCCGGGCACCGA
TCGTTTCATTCCAAAGGACTCGGCCATCAATGACCACCTTGAGCGCCTGCGTCTGTCCACGACCAAATCCTTGATTGAAC
GTCGTGACGTGATCGTCGTCGCTTCGGTGTCCTCAATCTACGGCCTGGGTGATCCAGATGCGTACCGAGCGCTACAGATC
GCTCTGTCCCCTGGGGTCAAACTAAACCAGAGAGAGCTAATTCGTCGCTTGGCTTTGCTGCAATATGATCGCACTGAGCG
CACCCTCAAGCGCGCAACGTTCCGCGTCCAAGGCGATGTGATTGATATTTTCCCCGCTGATTCCGAGCACAGGGCGGTTC
GGGTGGAGCTGTTGGATGACACTGTTGCGTCTGTCCAATGGATGGACCCTGTTACCGGCAAGACGTTGGGAGAGATAGAC
CATTATTTGGTTTCGCCAAAAACGCTTTTTGCCCCGCCCACGAATAAAATAGATTCCGCATCCAAAAAGATACTCGCTGA
TATGGAAGAGCGGGTTGACGAGCTGAACAGGAATAATCGCTTGGTCGAGGCAAACAGGCTGTACGAGCGGATCACGCATG
ACGTGGAAATGATGCGCGAGGTCGGCTATTGCTCGGGGATGGAGAATTACTCCTGCTATTTCAGCGACCGAGACGCAGCT
TCTCCTCCGATCACGTTGCTGGATTATTTGCCGAAAGACGGGCTGCTGTTCGTCGATGAATCCCATGTCATGGTGCCACA
GATATCCGCAATGTACCGGGGGGATCAGGCGCGCAAGGACACGCTGATCGATTACGGGTTCCGTTTGCCTTCATCGAAGA
ACAACCGGCCATTGAACTTTGACGAGTTCGAGAAGGTTAAGCCTCAGACCGTCTTTGTTTCCGCTACTCCGGGCGAATAC
GAGCTGAGGGTGTCGAAAGGCAGGGTTGTCGAACAGGTCATCAGGCCAACGGGACTGCTTGACCCCAAGGTTGAAGTGCG
GAAAGCGGACGGATACATAGATGACCTGCTTGCCGAAATATCGAAGTGCGTGAAGAGAAAGAATCGAGTGCTTGTGACTA
CGCTGACGAAGGTCAGTGCAGAAGAGCTAACGGATTTCTTGACGGACAACGGGATTCGAGCGCGCTACATGCATTCGGAC
ATAAAAGCGGAGGATCGTGTTGAGATCATCAATGGCCTGCGCGCAGGAGAGTTCGATGTTTTGATTGGGATTAGTCTTTT
GCGCGAAGGGCTGGATATTCCAGAGGCATCATTGGTTGCCATTCTCGATGCAGACCGTGCAGGATTCTTGCGTTCGGCCC
ATGCGCTCATTCAGATGATCGGTCGAGTCGCTCGGAATGAGAACGGTAAGGCGATCTTGTACGCCGACGCGGTGACGCCG
GCGATGAAACAGGCGATCGATGAGACCAATAGGCGCAGGCAGCTTCAAATTGCCTTTAACGAGGAAAATGGGATTTCTCC
AGCCTCGTCTGTGCGAAAACTAGCAGGAGAAGAGACGAATACGGAGGAGCCCACCGTTCATTCCGAGGCTTTCTGCGAGA
ACTTGTCCGACCTTTGCGATCAGATCACTGCCAAGGAACAGCAGCTACTCGAATTTACCGATACCGGTGACGAGCAGCGC
GTCGAAGACATTCGTCGTCAGTTGGATGGGTTGTACCGGCAATTCATTTACATCTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-103)

Ultra-violet resistance protein B (UvrB)

(553-593)

Helicase conserved C-terminal domain (Helicase_C)

(435-546)

UvrB interaction domain (UvrB_inter)

(160-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

52.292

89.514

0.468
  uvrB Streptococcus pneumoniae R6

52.292

89.514

0.468
  uvrB Streptococcus pneumoniae D39

52.292

89.514

0.468