Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   P3X35_RS02040 Genome accession   NZ_CP120920
Coordinates   378507..378905 (-) Length   132 a.a.
NCBI ID   WP_023855672.1    Uniprot ID   A0AAW6KF42
Organism   Bacillus paralicheniformis strain SYN-191     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 373507..383905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS02015 (P3X35_02015) - 373836..374519 (-) 684 WP_277868551.1 amino acid ABC transporter permease -
  P3X35_RS02020 (P3X35_02020) - 374531..375406 (-) 876 WP_026580508.1 transporter substrate-binding domain-containing protein -
  P3X35_RS02025 (P3X35_02025) - 375590..376141 (+) 552 WP_035337275.1 NAD(P)H-dependent oxidoreductase -
  P3X35_RS02030 (P3X35_02030) - 376237..376962 (+) 726 WP_035337274.1 AAA family ATPase -
  P3X35_RS02035 (P3X35_02035) - 377031..378467 (+) 1437 WP_020450094.1 family 1 glycosylhydrolase -
  P3X35_RS02040 (P3X35_02040) nin/comJ 378507..378905 (-) 399 WP_023855672.1 competence protein ComJ Regulator
  P3X35_RS02045 (P3X35_02045) nucA/comI 378923..379369 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P3X35_RS02050 (P3X35_02050) - 379672..379842 (+) 171 WP_023855671.1 hypothetical protein -
  P3X35_RS02055 (P3X35_02055) - 379848..380651 (+) 804 WP_035337270.1 protein kinase -
  P3X35_RS02060 (P3X35_02060) - 381056..381796 (-) 741 WP_020450098.1 LXG domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14928.99 Da        Isoelectric Point: 5.1700

>NTDB_id=809248 P3X35_RS02040 WP_023855672.1 378507..378905(-) (nin/comJ) [Bacillus paralicheniformis strain SYN-191]
MIKKWEAEEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTAGEHAVSFEALDNTASLVEVRLNVQEQVPSFNRRVTVSF
DVLHGGVEIASVLSKKLSCDIPQGVYQLTCYTIMPDQSSTAKITYILDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=809248 P3X35_RS02040 WP_023855672.1 378507..378905(-) (nin/comJ) [Bacillus paralicheniformis strain SYN-191]
TTGATCAAAAAGTGGGAAGCAGAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAAAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGCTACACAGCGGGAGAACACGCGGTCTCGTTTGAAGCTCTCGATA
ATACGGCATCATTAGTAGAAGTTCGTTTGAATGTCCAGGAACAGGTTCCCTCCTTTAACAGGCGCGTCACCGTTTCTTTC
GACGTGCTTCATGGCGGGGTCGAAATTGCAAGCGTCCTATCCAAGAAATTGTCATGCGACATCCCGCAAGGCGTCTATCA
GCTGACATGCTATACGATTATGCCTGATCAAAGCAGCACTGCGAAGATCACCTATATTCTCGATTTTAAACAGGCCTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

51.562

96.97

0.5