Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P3X35_RS02045 Genome accession   NZ_CP120920
Coordinates   378923..379369 (-) Length   148 a.a.
NCBI ID   WP_020450096.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain SYN-191     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 373923..384369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X35_RS02020 (P3X35_02020) - 374531..375406 (-) 876 WP_026580508.1 transporter substrate-binding domain-containing protein -
  P3X35_RS02025 (P3X35_02025) - 375590..376141 (+) 552 WP_035337275.1 NAD(P)H-dependent oxidoreductase -
  P3X35_RS02030 (P3X35_02030) - 376237..376962 (+) 726 WP_035337274.1 AAA family ATPase -
  P3X35_RS02035 (P3X35_02035) - 377031..378467 (+) 1437 WP_020450094.1 family 1 glycosylhydrolase -
  P3X35_RS02040 (P3X35_02040) nin/comJ 378507..378905 (-) 399 WP_023855672.1 competence protein ComJ Regulator
  P3X35_RS02045 (P3X35_02045) nucA/comI 378923..379369 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P3X35_RS02050 (P3X35_02050) - 379672..379842 (+) 171 WP_023855671.1 hypothetical protein -
  P3X35_RS02055 (P3X35_02055) - 379848..380651 (+) 804 WP_035337270.1 protein kinase -
  P3X35_RS02060 (P3X35_02060) - 381056..381796 (-) 741 WP_020450098.1 LXG domain-containing protein -
  P3X35_RS02065 (P3X35_02065) - 382200..384254 (+) 2055 WP_020450099.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16280.32 Da        Isoelectric Point: 5.7093

>NTDB_id=809249 P3X35_RS02045 WP_020450096.1 378923..379369(-) (nucA/comI) [Bacillus paralicheniformis strain SYN-191]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=809249 P3X35_RS02045 WP_020450096.1 378923..379369(-) (nucA/comI) [Bacillus paralicheniformis strain SYN-191]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635