Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RMP65_RS07040 Genome accession   NZ_CP135089
Coordinates   1429067..1429663 (-) Length   198 a.a.
NCBI ID   WP_024408566.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1424067..1434663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS07020 (RMP65_07020) - 1425715..1426383 (-) 669 WP_024407021.1 ABC transporter ATP-binding protein -
  RMP65_RS07025 (RMP65_07025) - 1426393..1427469 (-) 1077 WP_167787070.1 ABC transporter permease -
  RMP65_RS07030 (RMP65_07030) - 1427471..1427851 (-) 381 WP_024401154.1 OsmC family protein -
  RMP65_RS07035 (RMP65_07035) - 1427939..1428985 (-) 1047 WP_172100023.1 D-alanine--D-alanine ligase -
  RMP65_RS07040 (RMP65_07040) recR 1429067..1429663 (-) 597 WP_024408566.1 recombination mediator RecR Machinery gene
  RMP65_RS07045 (RMP65_07045) pbp2b 1429672..1431741 (-) 2070 WP_313681058.1 penicillin-binding protein PBP2B -
  RMP65_RS07050 (RMP65_07050) vga(F) 1431833..1433218 (-) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  RMP65_RS07055 (RMP65_07055) vicX 1433476..1434279 (-) 804 WP_024399908.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4829

>NTDB_id=808952 RMP65_RS07040 WP_024408566.1 1429067..1429663(-) (recR) [Streptococcus suis strain ID34567]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSVCGNLTDQDPCGICQDTSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=808952 RMP65_RS07040 WP_024408566.1 1429067..1429663(-) (recR) [Streptococcus suis strain ID34567]
ATGCTATATCCTACACCCATTGCCAAGTTGATTGACAGTTACTCCAAATTACCAGGAATCGGTATTAAAACAGCTACGCG
ACTGGCATTTTATACCATCGGTATGGAAGATGATGTGGTCAATGAATTTGCAAAAAATCTCTTGGCTGCCAAGAGGGATT
TGACCTATTGTTCGGTTTGTGGCAATTTGACAGACCAGGATCCTTGTGGCATTTGTCAAGATACCAGCCGTGATCAGTCG
ACTATTTTAATAGTCGAGGATAGTCGAGATGTGACAGCCTTGGAAAATATCCAAGAGTATCACGGTCTCTACCATGTCTT
GCACGGCTTGATTTCCCCAATGAATGGGATTGGGCCAGACGATATTAACCTGAAAACTCTGCTGACCCGCCTGATGGAAA
ATGAAGTGACAGAAGTCATTGTAGCGACCAATGCAACAGCAGATGGTGAAGCGACATCCATGTACATCTCACGTGTCCTA
AAGCCAGCGGGAATTAAGGTTACTCGCTTGGCACGAGGATTGGCAGTTGGAAGTGACATTGAATACGCAGATGAAGTCAC
CCTCCTTCGTGCCATTGAGAACAGGACAGAATTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

65.152

100

0.652
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49